myRT

myRT report for GCA_009876565.1_ASM987656v1

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Seq: WWUE01000011.1 Clostridium beijerinckii strain BIOML-A7 scaffold11_size134781, whole genome shotgun sequence (135236 bp)
Overview 1 RT 1: 1-4009 bp Neighborhood of RT #1 [1, 4032] Avd_like RVT-DGRs RVT-DGRs RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 1-255 bp Feature: domain Description: Avd_like Location: 4-244 bp Feature: domain Description: Avd_like Location: 4-244 bp Feature: gene Location: 927-1754 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1140-1632 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 40-1 632 bp Feature: gene Location: 1758-3098 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1971-2253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 971 -2253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2259-2889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2259-2889 bp Feature: gene Location: 3310-3522 bp Feature: domain Description: HTH_26 Location: 3325-3508 bp Feature: domain Description: HTH_26 Location: 3325-3508 bp Feature: gene Location: 3586-4032 bp Feature: domain Description: Phage_holin_4_1 Location: 3655-4009 bp Feature: domain Description: Phage_holin_4_1 Location: 3655-4009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUE01000019.1 Clostridium beijerinckii strain BIOML-A7 scaffold19_size109100, whole genome shotgun sequence (109100 bp)
Overview 1 RT 1: 76460-81602 bp Neighborhood of RT #1 [76460, 81607] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76460-76693 bp Feature: gene Location: 76774-78174 bp Feature: domain Description: DUF4145 Location: 77857-78133 bp Feature: domain Description: DUF4145 Location: 77857-78133 bp Feature: gene Location: 79119-79736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79125-79512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7912 5-79512 bp Feature: domain Description: GIIM Note: maturase Location: 79566-79716 bp Feature: domain Description: GIIM Note: maturase Location: 79566-79716 bp Feature: gene Location: 79850-80113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80015-80111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80015-80111 bp Feature: gene Location: 80845-81228 bp Feature: domain Description: SHOCT Location: 81139-81220 bp Feature: domain Description: SHOCT Location: 81139-812 2 0 bp Feature: gene Location: 81248-81607 bp Feature: domain Description: SHOCT Location: 81533-81602 bp Feature: domain Description: SHOCT Location: 81533-81602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUE01000024.1 Clostridium beijerinckii strain BIOML-A7 scaffold24_size75767, whole genome shotgun sequence (75767 bp)
Overview 1 RT 1: 51014-54174 bp Neighborhood of RT #1 [51014, 54674] XhlA HTH_26 RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 5103 2-51227 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_26 Location: 513 3 3 -51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: gene Location: 53115-53456 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: domain Description: Avd_like Location: 53 13 9-53 445 bp Feature: gene Location: 53589-54674 bp Feature: domain Description: FGE-sulfatase Location: 53820-54174 bp Feature: domain Description: FGE-sulfatase Location: 53 820-54174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: WWUE01000081.1 Clostridium beijerinckii strain BIOML-A7 scaffold81_size21792, whole genome shotgun sequence (22288 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 05-3023 bp Feature: domain Description: GIIM Note: maturase Location: 3074-3302 bp Feature: domain Description: GIIM Note: maturase Location: 3074 -3302 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)