myRT

myRT report for GCA_009876575.1_ASM987657v1

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Seq: WWUF01000019.1 Clostridium beijerinckii strain BIOML-A6 scaffold19_size108818, whole genome shotgun sequence (108818 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF41 45 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 81 251 -81 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUF01000020.1 Clostridium beijerinckii strain BIOML-A6 scaffold20_size159292, whole genome shotgun sequence (159292 bp)
Overview 1 RT 1: 23740-27616 bp Neighborhood of RT #1 [23740, 27639] FGE-sulfatase Avd_like RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 23740-24858 bp Feature: domain Description: FGE-sulfatase Location: 23971-24325 bp Feature: domain Description: FGE-sulfatase Location: 2 3971-2 432 5 bp Feature: gene Location: 24991-25332 bp Feature: domain Description: Avd_like Location: 25015-25321 bp Feature: domain Description: Avd_like Location: 2 5015-2 532 1 bp Feature: gene Location: 25629-26705 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25842-26496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 5842 -2 6496 bp Feature: gene Location: 26917-27129 bp Feature: domain Description: HTH_26 Location: 26932-27115 bp Feature: domain Description: HTH_2 6 Location: 2 6932 -2 7115 bp Feature: gene Location: 27193-27639 bp Feature: domain Description: Phage_holin_4_1 Location: 27262-27616 bp Feature: domain Description: Phage_holin_4_1 Location: 2 72 62 -2 7616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUF01000028.1 Clostridium beijerinckii strain BIOML-A6 scaffold28_size79313, whole genome shotgun sequence (79313 bp)
Overview 1 RT 1: 51014-54416 bp Neighborhood of RT #1 [51014, 54416] XhlA HTH_26 RVT-DGRs FGE-sulfatase Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 5103 2-51227 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_26 Location: 513 3 3 -51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: gene Location: 52925-54058 bp Feature: domain Description: FGE-sulfatase Location: 53156-53510 bp Feature: domain Description: FGE-sulfatase Location: 53 156-53 510 bp Feature: gene Location: 54060-54416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, FGE-sulfatase (pfam03781)

Seq: WWUF01000083.1 Clostridium beijerinckii strain BIOML-A6 scaffold83_size21704, whole genome shotgun sequence (21704 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 05-3023 bp Feature: domain Description: GIIM Note: maturase Location: 3074-3302 bp Feature: domain Description: GIIM Note: maturase Location: 3074 -3302 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)