myRT

myRT report for GCA_009876605.1_ASM987660v1

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Seq: WWUH01000019.1 Clostridium beijerinckii strain BIOML-A4 scaffold19_size109586, whole genome shotgun sequence (109586 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF41 45 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 81 251 -81 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUH01000026.1 Clostridium beijerinckii strain BIOML-A4 scaffold26_size157477, whole genome shotgun sequence (158415 bp)
Overview 1 RT 1: 22312-26498 bp Neighborhood of RT #1 [22312, 26521] Avd_like Avd_like RVT-DGRs RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 22312-22653 bp Feature: domain Description: Avd_like Location: 22336-22642 bp Feature: domain Description: Avd_like Location: 2 2 336-2 2 642 bp Feature: gene Location: 22928-23269 bp Feature: domain Description: Avd_like Location: 22952-23258 bp Feature: domain Description: Avd_like Location: 2 2 952 -2 32 58 bp Feature: gene Location: 23566-24144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23779-24121 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3779-2 412 1 bp Feature: gene Location: 24511-25587 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24724-25378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 472 4-2 5378 bp Feature: gene Location: 25799-26011 bp Feature: domain Description: HTH_26 Location: 25814-25997 bp Feature: domain Description: HTH_2 6 Location: 2 5814-2 5997 bp Feature: gene Location: 26075-26521 bp Feature: domain Description: Phage_holin_4_1 Location: 26144-26498 bp Feature: domain Description: Phage_holin_4_1 Location: 2 6144-2 6498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUH01000062.1 Clostridium beijerinckii strain BIOML-A4 scaffold62_size53552, whole genome shotgun sequence (53552 bp)
Overview 1 RT 1: 3-1919 bp Neighborhood of RT #1 [3, 1942] RVT-DGRs HTH_26 XhlA Feature: gene Location: 3-134 bp Feature: gene Location: 138-1214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 351-1005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 51-1005 bp Feature: gene Location: 1426-1638 bp Feature: domain Description: HTH_26 Location: 1441-1624 bp Feature: domain Description: HTH_26 Location: 1441-1624 bp Feature: gene Location: 1706-1942 bp Feature: domain Description: XhlA Location: 1724-1919 bp Feature: domain Description: XhlA Location: 1724-1919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_26 (pfam13443), XhlA (pfam10779)

Seq: WWUH01000086.1 Clostridium beijerinckii strain BIOML-A4 scaffold86_size10492, whole genome shotgun sequence (10492 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 62-3080 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)