myRT

myRT report for GCA_009876625.1_ASM987662v1

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Seq: WWUI01000019.1 Clostridium beijerinckii strain BIOML-A3 scaffold19_size108818, whole genome shotgun sequence (108818 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF41 45 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 81 251 -81 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUI01000024.1 Clostridium beijerinckii strain BIOML-A3 scaffold24_size75767, whole genome shotgun sequence (75767 bp)
Overview 1 RT 1: 51014-54174 bp Neighborhood of RT #1 [51014, 54674] XhlA HTH_26 RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 51032 -512 2 7 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_2 6 Location: 51333-51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52 609 bp Feature: gene Location: 53115-53456 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: gene Location: 53589-54674 bp Feature: domain Description: FGE-sulfatase Location: 53820-54174 bp Feature: domain Description: FGE-sulfatase Location: 5382 0-54174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: WWUI01000027.1 Clostridium beijerinckii strain BIOML-A3 scaffold27_size133853, whole genome shotgun sequence (133853 bp)
Overview 1 RT 1: 3-2125 bp Neighborhood of RT #1 [3, 2148] RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 3-134 bp Feature: gene Location: 138-1214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 351-1005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 51-1005 bp Feature: gene Location: 1426-1638 bp Feature: domain Description: HTH_26 Location: 1441-1624 bp Feature: domain Description: HTH_26 Location: 1441-1624 bp Feature: gene Location: 1702-2148 bp Feature: domain Description: Phage_holin_4_1 Location: 1771-2125 bp Feature: domain Description: Phage_holin_4_1 Location: 1771-2125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUI01000084.1 Clostridium beijerinckii strain BIOML-A3 scaffold84_size21775, whole genome shotgun sequence (22273 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 05-3023 bp Feature: domain Description: GIIM Note: maturase Location: 3074-3302 bp Feature: domain Description: GIIM Note: maturase Location: 3074 -3302 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)