myRT

myRT report for GCA_009876655.1_ASM987665v1

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Seq: WWUJ01000012.1 Clostridium beijerinckii strain BIOML-A2 scaffold12_size133896, whole genome shotgun sequence (134433 bp)
Overview 1 RT 1: 3-2125 bp Neighborhood of RT #1 [3, 2148] RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 3-134 bp Feature: gene Location: 138-1214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 351-1005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 351 -1 005 bp Feature: gene Location: 1426-1638 bp Feature: domain Description: HTH_26 Location: 1441-1624 bp Feature: domain Description: HTH_26 Location: 1 441 -1 624 bp Feature: gene Location: 1702-2148 bp Feature: domain Description: Phage_holin_4_1 Location: 1771-2125 bp Feature: domain Description: Phage_holin_4_1 Location: 1 771 -21 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUJ01000018.1 Clostridium beijerinckii strain BIOML-A2 scaffold18_size108818, whole genome shotgun sequence (108818 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-792 30 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 792 84-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-7982 9 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 812 51-8132 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUJ01000035.1 Clostridium beijerinckii strain BIOML-A2 scaffold35_size78086, whole genome shotgun sequence (79699 bp)
Overview 1 RT 1: 51014-53954 bp Neighborhood of RT #1 [51014, 53965] XhlA HTH_26 RVT-DGRs Avd_like Avd_like Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 5103 2-51227 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_26 Location: 513 3 3 -51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: gene Location: 53115-53456 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: domain Description: Avd_like Location: 53 13 9-53 445 bp Feature: gene Location: 53735-53965 bp Feature: domain Description: Avd_like Location: 53738-53954 bp Feature: domain Description: Avd_like Location: 53 73 8-53 954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, Avd_like (cd16376)

Seq: WWUJ01000088.1 Clostridium beijerinckii strain BIOML-A2 scaffold88_size10492, whole genome shotgun sequence (10492 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 62-3080 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)