myRT

myRT report for GCA_009876665.1_ASM987666v1

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Seq: WWUK01000010.1 Clostridium beijerinckii strain BIOML-A1 scaffold10_size136724, whole genome shotgun sequence (137119 bp)
Overview 1 RT 1: 1800-5676 bp Neighborhood of RT #1 [1800, 5699] FGE-sulfatase Avd_like RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 1800-2918 bp Feature: domain Description: FGE-sulfatase Location: 2031-2385 bp Feature: domain Description: FGE-sulfatase Location: 2031 -2385 bp Feature: gene Location: 3051-3392 bp Feature: domain Description: Avd_like Location: 3075-3381 bp Feature: domain Description: Avd_like Location: 3075-3381 bp Feature: gene Location: 3689-4765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3902-4556 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3902-4556 bp Feature: gene Location: 4977-5189 bp Feature: domain Description: HTH_26 Location: 4992-5175 bp Feature: domain Description: HTH_26 Location: 4992-51 75 bp Feature: gene Location: 5253-5699 bp Feature: domain Description: Phage_holin_4_1 Location: 5322-5676 bp Feature: domain Description: Phage_holin_4_1 Location: 5322-5676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUK01000019.1 Clostridium beijerinckii strain BIOML-A1 scaffold19_size108818, whole genome shotgun sequence (108818 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-792 30 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 792 84-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-7982 9 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 812 51-8132 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUK01000064.1 Clostridium beijerinckii strain BIOML-A1 scaffold64_size55108, whole genome shotgun sequence (55114 bp)
Overview 1 RT 1: 1-3527 bp Neighborhood of RT #1 [1, 3550] FGE-sulfatase Avd_like RVT-DGRs HTH_26 XhlA Feature: gene Location: 1-975 bp Feature: domain Description: FGE-sulfatase Location: 127-475 bp Feature: domain Description: FGE-sulfatase Location: 127-475 bp Feature: gene Location: 1108-1449 bp Feature: domain Description: Avd_like Location: 1132-1438 bp Feature: domain Description: Avd_like Location: 113 2-143 8 bp Feature: gene Location: 1746-2822 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1959-2613 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1959-2613 bp Feature: gene Location: 3034-3246 bp Feature: domain Description: HTH_26 Location: 3049-3232 bp Feature: domain Description: HTH_26 Location: 3 049-3 23 2 bp Feature: gene Location: 3314-3550 bp Feature: domain Description: XhlA Location: 3332-3527 bp Feature: domain Description: XhlA Location: 3 3 3 2-3 527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), XhlA (pfam10779)

Seq: WWUK01000087.1 Clostridium beijerinckii strain BIOML-A1 scaffold87_size21789, whole genome shotgun sequence (21789 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 05-3023 bp Feature: domain Description: GIIM Note: maturase Location: 3074-3302 bp Feature: domain Description: GIIM Note: maturase Location: 3074 -3302 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)