myRT

myRT report for GCA_009887645.1_ASM988764v1

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Seq: WXZS01000018.1 Pseudomonas aeruginosa strain VNMU149 MRSN567329_contig00018, whole genome shotgun sequence (426682 bp)
Overview 1 RT 1: 61647-70491 bp 2 RT 2: 86756-97053 bp Neighborhood of RT #1 [61647, 70499] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86756, 97064] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 61647-62321 bp Feature: domain Description: NTP_transferase_like_1 Location: 61653-62292 bp Feature: domain Description: NTP_transferase_like_1 Location: 61 653-62292 bp Feature: gene Location: 62318-63334 bp Feature: domain Description: COG3178 Location: 62321-63320 bp Feature: domain Description: COG31 78 Location: 62321 -63320 bp Feature: gene Location: 64607-66319 bp Feature: RT Description: RVT_N Location: 64664-64907 bp Feature: RT Description: RVT_N Location: 64664-64907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64952-65588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64952-65588 bp Feature: domain Description: YkfC Location: 65798-65948 bp Feature: domain Description: YkfC Location: 65798-65948 bp Feature: domain Description: HNH Note: nucleases Location: 66125-66263 bp Feature: domain Description: HNH Note: nucleases Location: 661 25-66263 bp Feature: gene Location: 66452-69226 bp Feature: domain Description: LptD Location: 66647-69212 bp Feature: domain Description: LptD Location: 66647-6921 2 bp Feature: gene Location: 69285-70499 bp Feature: domain Description: PRK10770 Location: 69297-70491 bp Feature: domain Description: PRK1 0770 Location: 69297-70491 bp Feature: gene Location: 86756-88609 bp Feature: domain Description: PRK05658 Location: 86768-88607 bp Feature: domain Description: PRK05658 Location: 86768-88607 bp Feature: gene Location: 88716-92453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88824-89481 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88824-89481 bp Feature: domain Description: PRK09776 Location: 89694-90165 bp Feature: domain Description: PRK09776 Location: 89694-901 65 bp Feature: domain Description: PAS Location: 90237-90747 bp Feature: domain Description: PAS Location: 90237-90747 bp Feature: domain Description: PRK10060 Location: 90756-92403 bp Feature: domain Description: PRK1 0060 Location: 90756-92403 bp Feature: gene Location: 93534-95219 bp Feature: RT Description: RVT_N Location: 93591-93831 bp Feature: RT Description: RVT_N Location: 93591 -93831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93879-94515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93879-9451 5 bp Feature: domain Description: GIIM Note: maturase Location: 94569-94800 bp Feature: domain Description: GIIM Note: maturase Location: 94569-94800 bp Feature: domain Description: HNH Note: nucleases Location: 95052-95190 bp Feature: domain Description: HNH Note: nucleases Location: 95052-951 90 bp Feature: gene Location: 95547-95684 bp Feature: gene Location: 95943-97064 bp Feature: domain Description: COG3177 Location: 95961-97053 bp Feature: domain Description: COG31 77 Location: 95961 -97053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )