myRT

myRT report for GCA_009887695.1_ASM988769v1

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Seq: WXZU01000005.1 Pseudomonas aeruginosa strain VNMU145 MRSN567286_contig00005, whole genome shotgun sequence (480528 bp)
Overview 1 RT 1: 395693-406001 bp 2 RT 2: 422259-431109 bp Neighborhood of RT #1 [395693, 406003] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [422259, 431138] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 395693-396814 bp Feature: domain Description: COG3177 Location: 395711-396803 bp Feature: domain Description: COG31 77 Location: 39571 1 -396803 bp Feature: gene Location: 397076-397237 bp Feature: gene Location: 397540-399225 bp Feature: RT Description: RVT_N Location: 397597-397837 bp Feature: RT Description: RVT_N Location: 397597-397837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397885-398521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397885-398521 bp Feature: domain Description: GIIM Note: maturase Location: 398575-398806 bp Feature: domain Description: GIIM Note: maturase Location: 398575-398806 bp Feature: domain Description: HNH Note: nucleases Location: 399058-399196 bp Feature: domain Description: HNH Note: nucleases Location: 399058-3991 96 bp Feature: gene Location: 400306-404043 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 400414-401071 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 40041 4-401 071 bp Feature: domain Description: PRK09776 Location: 401284-401755 bp Feature: domain Description: PRK09776 Location: 401 284-401 755 bp Feature: domain Description: PAS Location: 401800-402337 bp Feature: domain Description: PAS Location: 401 800-402337 bp Feature: domain Description: PRK10060 Location: 402346-403993 bp Feature: domain Description: PRK1 0060 Location: 402346-403993 bp Feature: gene Location: 404150-406003 bp Feature: domain Description: PRK05658 Location: 404162-406001 bp Feature: domain Description: PRK05658 Location: 4041 62-406001 bp Feature: gene Location: 422259-423473 bp Feature: domain Description: PRK10770 Location: 422271-423465 bp Feature: domain Description: PRK1 0770 Location: 422271 -423465 bp Feature: gene Location: 423532-426333 bp Feature: domain Description: LptD Location: 423727-426319 bp Feature: domain Description: LptD Location: 423727-42631 9 bp Feature: gene Location: 426466-428178 bp Feature: RT Description: RVT_N Location: 426523-426766 bp Feature: RT Description: RVT_N Location: 426523-426766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426811-427447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42681 1 -427447 bp Feature: domain Description: YkfC Location: 427654-427807 bp Feature: domain Description: YkfC Location: 427654-427807 bp Feature: domain Description: HNH Note: nucleases Location: 427984-428122 bp Feature: domain Description: HNH Note: nucleases Location: 427984-4281 22 bp Feature: gene Location: 429451-430467 bp Feature: domain Description: COG3178 Location: 429454-430453 bp Feature: domain Description: COG31 78 Location: 429454-430453 bp Feature: gene Location: 430464-431138 bp Feature: domain Description: NTP_transferase_like_1 Location: 430470-431109 bp Feature: domain Description: NTP_transferase_like_1 Location: 430470-431 1 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: WXZU01000062.1 Pseudomonas aeruginosa strain VNMU145 MRSN567286_contig00062, whole genome shotgun sequence (9599 bp)
Overview 1 RT 1: 6381-9596 bp Neighborhood of RT #1 [6381, 9596] IS5 RVT_N RVT-GII GIIM Feature: gene Location: 6381-6569 bp Feature: gene Location: 6958-7368 bp Feature: domain Description: IS5 Location: 6964-7342 bp Feature: domain Description: IS5 Location: 6964-7342 bp Feature: gene Location: 7489-8994 bp Feature: RT Description: RVT_N Location: 7570-7795 bp Feature: RT Description: RVT_N Location: 7570-7795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7846-8488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7846-8488 bp Feature: domain Description: GIIM Note: maturase Location: 8539-8773 bp Feature: domain Description: GIIM Note: maturase Location: 8539-8773 bp Feature: gene Location: 9411-9596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WXZU01000078.1 Pseudomonas aeruginosa strain VNMU145 MRSN567286_contig00078, whole genome shotgun sequence (1857 bp)
Overview 1 RT 1: 71-1854 bp Neighborhood of RT #1 [71, 1854] RVT-GII GIIM Feature: gene Location: 71-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1241 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1241 bp Feature: gene Location: 1690-1854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)