myRT

myRT report for GCA_009887705.1_ASM988770v1

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Seq: WXZT01000012.1 Pseudomonas aeruginosa strain VNMU148 MRSN567310_contig00012, whole genome shotgun sequence (412674 bp)
Overview 1 RT 1: 79626-88469 bp 2 RT 2: 104733-115030 bp Neighborhood of RT #1 [79626, 88477] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [104733, 115041] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 79626-80300 bp Feature: domain Description: NTP_transferase_like_1 Location: 79632-80271 bp Feature: domain Description: NTP_transferase_like_1 Location: 79632-80271 bp Feature: gene Location: 80297-81313 bp Feature: domain Description: COG3178 Location: 80300-81299 bp Feature: domain Description: COG31 78 Location: 80300-81 299 bp Feature: gene Location: 82585-84297 bp Feature: RT Description: RVT_N Location: 82642-82885 bp Feature: RT Description: RVT_N Location: 82642-82885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82930-83566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82930-83566 bp Feature: domain Description: YkfC Location: 83776-83926 bp Feature: domain Description: YkfC Location: 83776-83926 bp Feature: domain Description: HNH Note: nucleases Location: 84103-84241 bp Feature: domain Description: HNH Note: nucleases Location: 841 03-84241 bp Feature: gene Location: 84430-87204 bp Feature: domain Description: LptD Location: 84625-87190 bp Feature: domain Description: LptD Location: 84625-871 90 bp Feature: gene Location: 87263-88477 bp Feature: domain Description: PRK10770 Location: 87275-88469 bp Feature: domain Description: PRK1 0770 Location: 87275-88469 bp Feature: gene Location: 104733-106586 bp Feature: domain Description: PRK05658 Location: 104745-106584 bp Feature: domain Description: PRK05658 Location: 1 04745-1 06584 bp Feature: gene Location: 106693-110430 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 106801-107458 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 06801 -1 07458 bp Feature: domain Description: PRK09776 Location: 107671-108142 bp Feature: domain Description: PRK09776 Location: 1 07671 -1 081 42 bp Feature: domain Description: PAS Location: 108187-108724 bp Feature: domain Description: PAS Location: 1 081 87-1 08724 bp Feature: domain Description: PRK10060 Location: 108733-110380 bp Feature: domain Description: PRK1 0060 Location: 1 08733-1 1 0380 bp Feature: gene Location: 111511-113196 bp Feature: RT Description: RVT_N Location: 111568-111808 bp Feature: RT Description: RVT_N Location: 1 1 1 568-1 1 1 808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111856-112492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 856-1 1 2492 bp Feature: domain Description: GIIM Note: maturase Location: 112546-112777 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2546-1 1 2777 bp Feature: domain Description: HNH Note: nucleases Location: 113029-113167 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 3029-1 1 31 67 bp Feature: gene Location: 113524-113661 bp Feature: gene Location: 113920-115041 bp Feature: domain Description: COG3177 Location: 113938-115030 bp Feature: domain Description: COG31 77 Location: 1 1 3938-1 1 5030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )