myRT

myRT report for GCA_009898895.1_ASM989889v1

Download annotations/find similar RTs

Seq: VTME01000126.1 Escherichia coli strain 45981 45981_S8-contig_126, whole genome shotgun sequence (20015 bp)
Overview 1 RT 1: 9267-15163 bp Neighborhood of RT #1 [9267, 15163] RVT-UG8 RVT-UG3 PRK09692 Feature: gene Location: 9267-9422 bp Feature: gene Location: 9611-9760 bp Feature: gene Location: 10010-11971 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10529-10976 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 0529-1 0976 bp Feature: gene Location: 11968-13251 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12256-12763 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 2256-1 2763 bp Feature: gene Location: 13430-14614 bp Feature: domain Description: PRK09692 Location: 13436-14588 bp Feature: domain Description: PRK09692 Location: 1 3436-1 4588 bp Feature: gene Location: 14975-15163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)

Seq: VTME01000032.1 Escherichia coli strain 45981 45981_S8-contig_32, whole genome shotgun sequence (17081 bp)
Overview 1 RT 1: 14620-16847 bp Neighborhood of RT #1 [14620, 16903] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 14620-14916 bp Feature: gene Location: 15017-15157 bp Feature: gene Location: 15179-16903 bp Feature: domain Description: RVT_N Location: 15236-15473 bp Feature: domain Description: RVT_N Location: 152 36-15473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15524-16172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552 4-16172 bp Feature: domain Description: YkfC Location: 16304-16460 bp Feature: domain Description: YkfC Location: 16304-16460 bp Feature: domain Description: HNHc Note: nucleases Location: 16688-16847 bp Feature: domain Description: HNHc Note: nucleases Location: 16688-16847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: VTME01000080.1 Escherichia coli strain 45981 45981_S8-contig_80, whole genome shotgun sequence (19820 bp)
Overview 1 RT 1: 7154-12190 bp Neighborhood of RT #1 [7154, 12192] PHA02517 RVT-GII type_I_hlyD type_I_sec_HlyB Feature: gene Location: 7154-7573 bp Feature: domain Description: PHA02517 Location: 7157-7562 bp Feature: domain Description: PHA02517 Location: 7157-7562 bp Feature: gene Location: 7743-7874 bp Feature: gene Location: 8054-8488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093-8345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093 -83 45 bp Feature: gene Location: 8614-10050 bp Feature: domain Description: type_I_hlyD Location: 8776-10048 bp Feature: domain Description: type_I_hlyD Location: 8776-10048 bp Feature: gene Location: 10069-12192 bp Feature: domain Description: type_I_sec_HlyB Location: 10099-12190 bp Feature: domain Description: type_I_sec_HlyB Location: 10099-12190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, type_I_hlyD (TIGR01843), type_I_sec_HlyB (TIGR01846)