myRT

myRT report for GCA_009898905.1_ASM989890v1

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Seq: VTMD01000032.1 Escherichia coli strain 47064 47064_S12-contig_32, whole genome shotgun sequence (14114 bp)
Overview 1 RT 1: 3782-6947 bp Neighborhood of RT #1 [3782, 6958] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 3782-4288 bp Feature: domain Description: HlyC Location: 3803-4163 bp Feature: domain Description: HlyC Location: 3803-41 63 bp Feature: gene Location: 4369-5385 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: gene Location: 5246-6058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-591 8 bp Feature: gene Location: 6231-6416 bp Feature: gene Location: 6539-6958 bp Feature: domain Description: PHA02517 Location: 6542-6947 bp Feature: domain Description: PHA0251 7 Location: 6542-6947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: VTMD01000039.1 Escherichia coli strain 47064 47064_S12-contig_39, whole genome shotgun sequence (186301 bp)
Overview 1 RT 1: 30205-34497 bp Neighborhood of RT #1 [30205, 34592] CdiI_3 RVT-GII RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3436 Feature: gene Location: 30205-30591 bp Feature: domain Description: CdiI_3 Location: 30229-30505 bp Feature: domain Description: CdiI_3 Location: 302 2 9-30505 bp Feature: gene Location: 30790-30930 bp Feature: gene Location: 31038-31520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31359-31446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31359-31446 bp Feature: gene Location: 31559-32329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31562-31976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31562 -31976 bp Feature: domain Description: GIIM Note: maturase Location: 32027-32192 bp Feature: domain Description: GIIM Note: maturase Location: 32 02 7-32 192 bp Feature: gene Location: 32992-33879 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32995-33724 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 995-3372 4 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33745-33853 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33745-33853 bp Feature: gene Location: 33810-34592 bp Feature: domain Description: COG3436 Location: 34161-34497 bp Feature: domain Description: COG3436 Location: 34161-34497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase )

Seq: VTMD01000041.1 Escherichia coli strain 47064 47064_S12-contig_41, whole genome shotgun sequence (17481 bp)
Overview 1 RT 1: 7077-10561 bp Neighborhood of RT #1 [7077, 10561] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 7077-7229 bp Feature: gene Location: 7299-8201 bp Feature: domain Description: DUF1281 Location: 7368-7896 bp Feature: domain Description: DUF1281 Location: 73 68-7896 bp Feature: domain Description: DUF1281_C Location: 7902-8142 bp Feature: domain Description: DUF1281_C Location: 7902-8142 bp Feature: gene Location: 8278-10002 bp Feature: RT Description: RVT_N Location: 8335-8572 bp Feature: RT Description: RVT_N Location: 83 3 5-8572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8623-9271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8623 -9271 bp Feature: domain Description: YkfC Location: 9403-9559 bp Feature: domain Description: YkfC Location: 9403 -9559 bp Feature: domain Description: HNHc Note: nucleases Location: 9787-9946 bp Feature: domain Description: HNHc Note: nucleases Location: 9787-9946 bp Feature: gene Location: 10043-10183 bp Feature: gene Location: 10265-10561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)