myRT

myRT report for GCA_009898965.1_ASM989896v1

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Seq: VTMG01000016.1 Escherichia coli strain 45300 45300_S4-contig_16, whole genome shotgun sequence (48203 bp)
Overview 1 RT 1: 7795-11674 bp Neighborhood of RT #1 [7795, 11679] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 7795-8511 bp Feature: domain Description: rph Location: 7798-8506 bp Feature: domain Description: rph Location: 7798-8506 bp Feature: gene Location: 8562-9218 bp Feature: domain Description: pyrE Location: 8580-9213 bp Feature: domain Description: pyrE Location: 8580-921 3 bp Feature: gene Location: 9515-10474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9650-10199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9650-1 01 99 bp Feature: gene Location: 10518-11114 bp Feature: domain Description: slmA Location: 10524-11100 bp Feature: domain Description: slmA Location: 1 0524-1 1 1 00 bp Feature: gene Location: 11221-11679 bp Feature: domain Description: dut Location: 11227-11674 bp Feature: domain Description: dut Location: 1 1 227-1 1 674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), dut (TIGR00576), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons

Seq: VTMG01000025.1 Escherichia coli strain 45300 45300_S4-contig_25, whole genome shotgun sequence (28547 bp)
Overview 1 RT 1: 21514-24565 bp Neighborhood of RT #1 [21514, 24690] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 21514-21933 bp Feature: domain Description: PHA02517 Location: 21517-21922 bp Feature: domain Description: PHA02 517 Location: 2 1517-2 192 2 bp Feature: gene Location: 22076-22234 bp Feature: gene Location: 22414-23115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22420-22975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 42 0-2 2 975 bp Feature: gene Location: 23087-24103 bp Feature: domain Description: YkfC Location: 23783-24053 bp Feature: domain Description: YkfC Location: 2 3783-2 4053 bp Feature: gene Location: 24184-24690 bp Feature: domain Description: HlyC Location: 24205-24565 bp Feature: domain Description: HlyC Location: 2 42 05-2 4565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: VTMG01000026.1 Escherichia coli strain 45300 45300_S4-contig_26, whole genome shotgun sequence (56535 bp)
Overview 1 RT 1: 4501-8652 bp Neighborhood of RT #1 [4501, 8652] DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 4501-4782 bp Feature: domain Description: DinI Location: 4591-4771 bp Feature: domain Description: DinI Location: 4591-4771 bp Feature: gene Location: 4860-5129 bp Feature: gene Location: 5772-7496 bp Feature: RT Description: RVT_N Location: 5829-6066 bp Feature: RT Description: RVT_N Location: 5829-6066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6117-6765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6117-6765 bp Feature: domain Description: YkfC Location: 6897-7053 bp Feature: domain Description: YkfC Location: 6897-7053 bp Feature: domain Description: HNHc Note: nucleases Location: 7281-7440 bp Feature: domain Description: HNHc Note: nucleases Location: 7281-7440 bp Feature: gene Location: 7573-8475 bp Feature: domain Description: DUF1281 Location: 7642-8170 bp Feature: domain Description: DUF1281 Location: 7642-8170 bp Feature: domain Description: DUF1281_C Location: 8176-8416 bp Feature: domain Description: DUF1281_C Location: 8176-8416 bp Feature: gene Location: 8479-8652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)