myRT

myRT report for GCA_009898985.1_ASM989898v1

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Seq: VTMH01000004.1 Escherichia coli strain 45292 45292_S31-contig_4, whole genome shotgun sequence (7602 bp)
Overview 1 RT 1: 3782-6947 bp Neighborhood of RT #1 [3782, 6958] HlyC YkfC RVT-GII Tra5 Feature: gene Location: 3782-4288 bp Feature: domain Description: HlyC Location: 3803-4163 bp Feature: domain Description: HlyC Location: 3803-41 63 bp Feature: gene Location: 4369-5385 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: gene Location: 5363-6058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5366-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5366-591 8 bp Feature: gene Location: 6231-6416 bp Feature: gene Location: 6539-6958 bp Feature: domain Description: Tra5 Location: 6545-6947 bp Feature: domain Description: Tra5 Location: 6545-6947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, Tra5 (COG2801)

Seq: VTMH01000065.1 Escherichia coli strain 45292 45292_S31-contig_65, whole genome shotgun sequence (23072 bp)
Overview 1 RT 1: 4499-8650 bp Neighborhood of RT #1 [4499, 8650] DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 4499-4780 bp Feature: domain Description: DinI Location: 4589-4769 bp Feature: domain Description: DinI Location: 4589-4769 bp Feature: gene Location: 4858-5127 bp Feature: gene Location: 5770-7494 bp Feature: RT Description: RVT_N Location: 5827-6064 bp Feature: RT Description: RVT_N Location: 582 7-6064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6115-6763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6115-6763 bp Feature: domain Description: YkfC Location: 6895-7051 bp Feature: domain Description: YkfC Location: 6895-7051 bp Feature: domain Description: HNHc Note: nucleases Location: 7279-7438 bp Feature: domain Description: HNHc Note: nucleases Location: 72 79-7438 bp Feature: gene Location: 7571-8473 bp Feature: domain Description: DUF1281 Location: 7640-8168 bp Feature: domain Description: DUF12 81 Location: 7640-8168 bp Feature: domain Description: DUF1281_C Location: 8174-8414 bp Feature: domain Description: DUF12 81_C Location: 8174-8414 bp Feature: gene Location: 8477-8650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)