myRT

myRT report for GCA_009899005.1_ASM989900v1

Download annotations/find similar RTs

Seq: VTMI01000038.1 Escherichia coli strain 45288 45288_S27-contig_38, whole genome shotgun sequence (14757 bp)
Overview 1 RT 1: 6777-10569 bp Neighborhood of RT #1 [6777, 10569] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 6777-7046 bp Feature: gene Location: 7527-7667 bp Feature: gene Location: 7689-9413 bp Feature: RT Description: RVT_N Location: 7746-7983 bp Feature: RT Description: RVT_N Location: 7746-7983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8034-8682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8034-8682 bp Feature: domain Description: YkfC Location: 8814-8970 bp Feature: domain Description: YkfC Location: 881 4-8970 bp Feature: domain Description: HNHc Note: nucleases Location: 9198-9357 bp Feature: domain Description: HNHc Note: nucleases Location: 91 98-9357 bp Feature: gene Location: 9490-10392 bp Feature: domain Description: DUF1281 Location: 9559-10087 bp Feature: domain Description: DUF1 281 Location: 9559-1 0087 bp Feature: domain Description: DUF1281_C Location: 10093-10345 bp Feature: domain Description: DUF1 281 _C Location: 1 0093-1 0345 bp Feature: gene Location: 10396-10569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: VTMI01000082.1 Escherichia coli strain 45288 45288_S27-contig_82, whole genome shotgun sequence (37192 bp)
Overview 1 RT 1: 9749-13631 bp Neighborhood of RT #1 [9749, 13636] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9749-10207 bp Feature: domain Description: dut Location: 9755-10202 bp Feature: domain Description: dut Location: 9755-102 02 bp Feature: gene Location: 10314-10910 bp Feature: domain Description: slmA Location: 10320-10896 bp Feature: domain Description: slmA Location: 1032 0-10896 bp Feature: gene Location: 10956-11915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11091-11640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11091-11640 bp Feature: gene Location: 12213-12869 bp Feature: domain Description: pyrE Location: 12231-12864 bp Feature: domain Description: pyrE Location: 12 2 31-12 864 bp Feature: gene Location: 12920-13636 bp Feature: domain Description: rph Location: 12923-13631 bp Feature: domain Description: rph Location: 12 92 3-13631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: VTMI01000093.1 Escherichia coli strain 45288 45288_S27-contig_93, whole genome shotgun sequence (14481 bp)
Overview 1 RT 1: 3795-6959 bp Neighborhood of RT #1 [3795, 6970] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 3795-4214 bp Feature: domain Description: HlyC Location: 3816-4092 bp Feature: domain Description: HlyC Location: 3 816-4092 bp Feature: gene Location: 4381-5397 bp Feature: domain Description: YkfC Location: 5077-5347 bp Feature: domain Description: YkfC Location: 5077-53 47 bp Feature: gene Location: 5258-6070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5351-5930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 51-593 0 bp Feature: gene Location: 6243-6428 bp Feature: gene Location: 6551-6970 bp Feature: domain Description: PHA02517 Location: 6554-6959 bp Feature: domain Description: PHA02517 Location: 6554-6959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)