myRT

myRT report for GCA_009899035.1_ASM989903v1

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Seq: VTMK01000003.1 Escherichia coli strain 44876 44876_S19-contig_3, whole genome shotgun sequence (225195 bp)
Overview 1 RT 1: 69162-75229 bp Neighborhood of RT #1 [69162, 75249] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 69162-69314 bp Feature: gene Location: 69589-70767 bp Feature: domain Description: PRK09692 Location: 69595-70753 bp Feature: domain Description: PRK09692 Location: 69595-70753 bp Feature: gene Location: 70769-71965 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 71054-71516 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 71 054-71 51 6 bp Feature: gene Location: 71969-73972 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 72464-72911 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 72464-7291 1 bp Feature: gene Location: 74421-74693 bp Feature: domain Description: PRK09678 Location: 74430-74598 bp Feature: domain Description: PRK09678 Location: 74430-74598 bp Feature: gene Location: 74695-75249 bp Feature: domain Description: Psu Location: 74719-75229 bp Feature: domain Description: Psu Location: 7471 9-75229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: VTMK01000082.1 Escherichia coli strain 44876 44876_S19-contig_82, whole genome shotgun sequence (2464 bp)
Overview 1 RT 1: 1-1977 bp Neighborhood of RT #1 [1, 2222] RVT-GII GIIM Feature: gene Location: 1-405 bp Feature: gene Location: 699-2222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972 -1704 bp Feature: domain Description: GIIM Note: maturase Location: 1779-1977 bp Feature: domain Description: GIIM Note: maturase Location: 1779-1977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VTMK01000009.1 Escherichia coli strain 44876 44876_S19-contig_9, whole genome shotgun sequence (22412 bp)
Overview 1 RT 1: 6208-10359 bp Neighborhood of RT #1 [6208, 10359] DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 6208-6489 bp Feature: domain Description: DinI Location: 6298-6478 bp Feature: domain Description: DinI Location: 6298-6478 bp Feature: gene Location: 6567-6836 bp Feature: gene Location: 7479-9203 bp Feature: domain Description: RVT_N Location: 7536-7773 bp Feature: domain Description: RVT_N Location: 753 6-7773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7824-8472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7824-8472 bp Feature: domain Description: YkfC Location: 8604-8760 bp Feature: domain Description: YkfC Location: 8604-8760 bp Feature: domain Description: HNHc Note: nucleases Location: 8988-9147 bp Feature: domain Description: HNHc Note: nucleases Location: 8988-9147 bp Feature: gene Location: 9280-10182 bp Feature: domain Description: DUF1281 Location: 9349-9877 bp Feature: domain Description: DUF1281 Location: 93 49-9877 bp Feature: domain Description: DUF1281_C Location: 9883-10123 bp Feature: domain Description: DUF1281_C Location: 9883 -10123 bp Feature: gene Location: 10186-10359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: VTMK01000097.1 Escherichia coli strain 44876 44876_S19-contig_97, whole genome shotgun sequence (10166 bp)
Overview 1 RT 1: 7156-10039 bp Neighborhood of RT #1 [7156, 10164] Tra5 RVT-GII YkfC HlyC Feature: gene Location: 7156-7575 bp Feature: domain Description: Tra5 Location: 7162-7570 bp Feature: domain Description: Tra5 Location: 7162-7570 bp Feature: gene Location: 7698-7883 bp Feature: gene Location: 8056-8868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8149-8728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814 9-8728 bp Feature: gene Location: 8729-9745 bp Feature: domain Description: YkfC Location: 9425-9695 bp Feature: domain Description: YkfC Location: 94 25-9695 bp Feature: gene Location: 9826-10164 bp Feature: domain Description: HlyC Location: 9847-10039 bp Feature: domain Description: HlyC Location: 984 7-10039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, YkfC (COG3344), HlyC (pfam02794)