myRT

myRT report for GCA_009899125.1_ASM989912v1

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Seq: VTMO01000109.1 Escherichia coli strain 44597 44597_S20-contig_109, whole genome shotgun sequence (6298 bp)
Overview 1 RT 1: 1857-5571 bp Neighborhood of RT #1 [1857, 5627] PRK13699 DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1857-2540 bp Feature: domain Description: PRK13699 Location: 1860-2538 bp Feature: domain Description: PRK1 3699 Location: 1 860-2538 bp Feature: gene Location: 2924-3826 bp Feature: domain Description: DUF1281 Location: 2993-3521 bp Feature: domain Description: DUF1 281 Location: 2993-3521 bp Feature: domain Description: DUF1281_C Location: 3527-3767 bp Feature: domain Description: DUF1 281 _C Location: 3527-3767 bp Feature: gene Location: 3903-5627 bp Feature: RT Description: RVT_N Location: 3960-4197 bp Feature: RT Description: RVT_N Location: 3960-41 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4248-4896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4248-4896 bp Feature: domain Description: YkfC Location: 5028-5184 bp Feature: domain Description: YkfC Location: 5028-51 84 bp Feature: domain Description: HNHc Note: nucleases Location: 5412-5571 bp Feature: domain Description: HNHc Note: nucleases Location: 541 2-5571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: VTMO01000031.1 Escherichia coli strain 44597 44597_S20-contig_31, whole genome shotgun sequence (14106 bp)
Overview 1 RT 1: 3782-6947 bp Neighborhood of RT #1 [3782, 6958] HlyC YkfC RVT-GII Tra5 Feature: gene Location: 3782-4288 bp Feature: domain Description: HlyC Location: 3803-4163 bp Feature: domain Description: HlyC Location: 3803-4163 bp Feature: gene Location: 4369-5385 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: gene Location: 5246-6058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5918 bp Feature: gene Location: 6231-6416 bp Feature: gene Location: 6539-6958 bp Feature: domain Description: Tra5 Location: 6545-6947 bp Feature: domain Description: Tra5 Location: 6545-6947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, Tra5 (COG2801)