myRT

myRT report for GCA_009899175.1_ASM989917v1

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Seq: VTMS01000002.1 Escherichia coli strain 42405 42405_S18-contig_2, whole genome shotgun sequence (386852 bp)
Overview 1 RT 1: 21949-25589 bp Neighborhood of RT #1 [21949, 25654] COG3547 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 21949-22338 bp Feature: domain Description: COG3547 Location: 22015-22276 bp Feature: domain Description: COG3547 Location: 2201 5-22276 bp Feature: gene Location: 22497-22943 bp Feature: domain Description: PHA02517 Location: 22500-22941 bp Feature: domain Description: PHA0251 7 Location: 22500-22941 bp Feature: gene Location: 23060-24583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23333-24065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23333-24065 bp Feature: domain Description: GIIM Note: maturase Location: 24140-24338 bp Feature: domain Description: GIIM Note: maturase Location: 241 40-24338 bp Feature: gene Location: 24537-24962 bp Feature: gene Location: 25175-25654 bp Feature: domain Description: PHA02517 Location: 25235-25589 bp Feature: domain Description: PHA0251 7 Location: 25235-25589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VTMS01000021.1 Escherichia coli strain 42405 42405_S18-contig_21, whole genome shotgun sequence (155273 bp)
Overview 1 RT 1: 51390-55269 bp Neighborhood of RT #1 [51390, 55274] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51390-51848 bp Feature: domain Description: dut Location: 51396-51843 bp Feature: domain Description: dut Location: 51396-51843 bp Feature: gene Location: 51955-52551 bp Feature: domain Description: slmA Location: 51961-52537 bp Feature: domain Description: slmA Location: 51961-52 537 bp Feature: gene Location: 52595-53554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52730-53279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 730-532 79 bp Feature: gene Location: 53851-54507 bp Feature: domain Description: pyrE Location: 53869-54502 bp Feature: domain Description: pyrE Location: 53869-54502 bp Feature: gene Location: 54558-55274 bp Feature: domain Description: rph Location: 54561-55269 bp Feature: domain Description: rph Location: 54561-552 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: VTMS01000036.1 Escherichia coli strain 42405 42405_S18-contig_36, whole genome shotgun sequence (10946 bp)
Overview 1 RT 1: 3045-6210 bp Neighborhood of RT #1 [3045, 6221] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 3045-3551 bp Feature: domain Description: HlyC Location: 3066-3426 bp Feature: domain Description: HlyC Location: 3 066-3 426 bp Feature: gene Location: 3632-4648 bp Feature: domain Description: YkfC Location: 4328-4598 bp Feature: domain Description: YkfC Location: 43 28-4598 bp Feature: gene Location: 4509-5321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602-5181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602-5181 bp Feature: gene Location: 5494-5679 bp Feature: gene Location: 5802-6221 bp Feature: domain Description: PHA02517 Location: 5805-6210 bp Feature: domain Description: PHA02517 Location: 5805-6210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: VTMS01000041.1 Escherichia coli strain 42405 42405_S18-contig_41, whole genome shotgun sequence (20285 bp)
Overview 1 RT 1: 6209-10360 bp Neighborhood of RT #1 [6209, 10360] DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 6209-6490 bp Feature: domain Description: DinI Location: 6299-6479 bp Feature: domain Description: DinI Location: 6299-64 79 bp Feature: gene Location: 6568-6837 bp Feature: gene Location: 7480-9204 bp Feature: RT Description: RVT_N Location: 7537-7774 bp Feature: RT Description: RVT_N Location: 7537-7774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7825-8473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7825-84 73 bp Feature: domain Description: YkfC Location: 8605-8761 bp Feature: domain Description: YkfC Location: 8605-8761 bp Feature: domain Description: HNHc Note: nucleases Location: 8989-9148 bp Feature: domain Description: HNHc Note: nucleases Location: 8989-914 8 bp Feature: gene Location: 9281-10183 bp Feature: domain Description: DUF1281 Location: 9350-9878 bp Feature: domain Description: DUF1281 Location: 9350-9878 bp Feature: domain Description: DUF1281_C Location: 9884-10124 bp Feature: domain Description: DUF1281_C Location: 9884 -10124 bp Feature: gene Location: 10187-10360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)