myRT

myRT report for GCA_009899255.1_ASM989925v1

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Seq: VTMW01000128.1 Escherichia coli strain 37300 37300_S6-contig_128, whole genome shotgun sequence (12893 bp)
Overview 1 RT 1: 2490-5974 bp Neighborhood of RT #1 [2490, 5974] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 2490-2642 bp Feature: gene Location: 2712-3614 bp Feature: domain Description: DUF1281 Location: 2781-3309 bp Feature: domain Description: DUF1 281 Location: 2781 -3309 bp Feature: domain Description: DUF1281_C Location: 3315-3555 bp Feature: domain Description: DUF1 281 _C Location: 331 5-3555 bp Feature: gene Location: 3691-5415 bp Feature: RT Description: RVT_N Location: 3748-3985 bp Feature: RT Description: RVT_N Location: 3748-3985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036-4684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036-4684 bp Feature: domain Description: YkfC Location: 4816-4972 bp Feature: domain Description: YkfC Location: 481 6-4972 bp Feature: domain Description: HNHc Note: nucleases Location: 5200-5359 bp Feature: domain Description: HNHc Note: nucleases Location: 5200-5359 bp Feature: gene Location: 5456-5596 bp Feature: gene Location: 5678-5974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: VTMW01000026.1 Escherichia coli strain 37300 37300_S6-contig_26, whole genome shotgun sequence (19391 bp)
Overview 1 RT 1: 12434-15485 bp Neighborhood of RT #1 [12434, 15610] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 12434-12853 bp Feature: domain Description: PHA02517 Location: 12437-12842 bp Feature: domain Description: PHA02 517 Location: 12 437-12 842 bp Feature: gene Location: 13023-13154 bp Feature: gene Location: 13334-14146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13427-14006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342 7-14006 bp Feature: gene Location: 14007-15023 bp Feature: domain Description: YkfC Location: 14703-14973 bp Feature: domain Description: YkfC Location: 14703-14973 bp Feature: gene Location: 15104-15610 bp Feature: domain Description: HlyC Location: 15125-15485 bp Feature: domain Description: HlyC Location: 1512 5-15485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: VTMW01000061.1 Escherichia coli strain 37300 37300_S6-contig_61, whole genome shotgun sequence (62947 bp)
Overview 1 RT 1: 33807-37686 bp Neighborhood of RT #1 [33807, 37691] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 33807-34523 bp Feature: domain Description: rph Location: 33810-34518 bp Feature: domain Description: rph Location: 3 3 810-3 4518 bp Feature: gene Location: 34574-35230 bp Feature: domain Description: pyrE Location: 34592-35225 bp Feature: domain Description: pyrE Location: 3 4592-3 5225 bp Feature: gene Location: 35527-36486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35662-36211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 5662-3 6211 bp Feature: gene Location: 36530-37126 bp Feature: domain Description: slmA Location: 36536-37112 bp Feature: domain Description: slmA Location: 3 653 6-3 7112 bp Feature: gene Location: 37233-37691 bp Feature: domain Description: dut Location: 37239-37686 bp Feature: domain Description: dut Location: 3 723 9-3 7686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)