myRT

myRT report for GCA_009899265.1_ASM989926v1

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Seq: VTMX01000020.1 Escherichia coli strain 37299 37299_S11-contig_20, whole genome shotgun sequence (6598 bp)
Overview 1 RT 1: 3-3350 bp Neighborhood of RT #1 [3, 3352] DUF1281 RVT-GII GIIM HNHc RVT_N RVT-GII PRK09183 Feature: gene Location: 3-239 bp Feature: domain Description: DUF1281 Location: 72-237 bp Feature: domain Description: DUF1 281 Location: 72-237 bp Feature: gene Location: 316-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-508 bp Feature: domain Description: GIIM Note: maturase Location: 562-793 bp Feature: domain Description: GIIM Note: maturase Location: 562-793 bp Feature: domain Description: HNHc Note: nucleases Location: 1024-1183 bp Feature: domain Description: HNHc Note: nucleases Location: 1 024-1 1 83 bp Feature: gene Location: 1307-2041 bp Feature: RT Description: RVT_N Location: 1364-1601 bp Feature: RT Description: RVT_N Location: 1 364-1 601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1652-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 652-201 8 bp Feature: gene Location: 2082-2222 bp Feature: gene Location: 2573-3352 bp Feature: domain Description: PRK09183 Location: 2579-3350 bp Feature: domain Description: PRK091 83 Location: 2579-3350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), PRK09183 (transposase/IS protein; Provisional)

Seq: VTMX01000030.1 Escherichia coli strain 37299 37299_S11-contig_30, whole genome shotgun sequence (85312 bp)
Overview 1 RT 1: 30296-34175 bp Neighborhood of RT #1 [30296, 34180] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 30296-31012 bp Feature: domain Description: rph Location: 30299-31007 bp Feature: domain Description: rph Location: 302 99-31007 bp Feature: gene Location: 31063-31719 bp Feature: domain Description: pyrE Location: 31081-31714 bp Feature: domain Description: pyrE Location: 31081-31714 bp Feature: gene Location: 32016-32975 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32151-32700 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 151-32 700 bp Feature: gene Location: 33019-33615 bp Feature: domain Description: slmA Location: 33025-33601 bp Feature: domain Description: slmA Location: 3302 5-33601 bp Feature: gene Location: 33722-34180 bp Feature: domain Description: dut Location: 33728-34175 bp Feature: domain Description: dut Location: 3372 8-34175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: VTMX01000084.1 Escherichia coli strain 37299 37299_S11-contig_84, whole genome shotgun sequence (15881 bp)
Overview 1 RT 1: 5215-8026 bp Neighborhood of RT #1 [5215, 8037] YkfC RVT-GII PHA02517 Feature: gene Location: 5215-5367 bp Feature: gene Location: 5448-6464 bp Feature: domain Description: YkfC Location: 6144-6414 bp Feature: domain Description: YkfC Location: 6144-6414 bp Feature: gene Location: 6442-7137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6445-6997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6445-6997 bp Feature: gene Location: 7310-7495 bp Feature: gene Location: 7618-8037 bp Feature: domain Description: PHA02517 Location: 7621-8026 bp Feature: domain Description: PHA02517 Location: 7621-8026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)