myRT

myRT report for GCA_009899355.1_ASM989935v1

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Seq: VTNB01000001.1 Escherichia coli strain 36468 36468_S80-contig_1, whole genome shotgun sequence (157920 bp)
Overview 1 RT 1: 27909-31670 bp Neighborhood of RT #1 [27909, 31675] AlpA RVT-GII cobU cobS Feature: gene Location: 27909-28187 bp Feature: domain Description: AlpA Location: 28005-28182 bp Feature: domain Description: AlpA Location: 28005-281 82 bp Feature: gene Location: 28222-28524 bp Feature: gene Location: 28878-30140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29121-29853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 21 -29853 bp Feature: gene Location: 30390-30935 bp Feature: domain Description: cobU Location: 30393-30933 bp Feature: domain Description: cobU Location: 30393-30933 bp Feature: gene Location: 30932-31675 bp Feature: domain Description: cobS Location: 30935-31670 bp Feature: domain Description: cobS Location: 30935-31 670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-GII, cobU (PRK05800), cobS (TIGR00317)

Seq: VTNB01000020.1 Escherichia coli strain 36468 36468_S80-contig_20, whole genome shotgun sequence (14558 bp)
Overview 1 RT 1: 7885-10707 bp Neighborhood of RT #1 [7885, 10707] PHA02517 RVT-GII YkfC Feature: gene Location: 7885-8304 bp Feature: domain Description: PHA02517 Location: 7888-8293 bp Feature: domain Description: PHA02 517 Location: 7888-82 93 bp Feature: gene Location: 8474-8605 bp Feature: gene Location: 8785-9597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8878-9457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8878-9457 bp Feature: gene Location: 9458-10474 bp Feature: domain Description: YkfC Location: 10154-10424 bp Feature: domain Description: YkfC Location: 10154-1042 4 bp Feature: gene Location: 10531-10707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344)

Seq: VTNB01000037.1 Escherichia coli strain 36468 36468_S80-contig_37, whole genome shotgun sequence (6583 bp)
Overview 1 RT 1: 1324-5564 bp Neighborhood of RT #1 [1324, 5575] DUF1281 DUF1281_C RVT-GII GIIM HNHc RVT_N RVT-GII DinI Feature: gene Location: 1324-1530 bp Feature: gene Location: 1600-2502 bp Feature: domain Description: DUF1281 Location: 1669-2197 bp Feature: domain Description: DUF1281 Location: 1669-2197 bp Feature: domain Description: DUF1281_C Location: 2203-2443 bp Feature: domain Description: DUF1281_C Location: 2203 -2443 bp Feature: gene Location: 2579-3478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582-2747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582-2747 bp Feature: domain Description: GIIM Note: maturase Location: 2801-3032 bp Feature: domain Description: GIIM Note: maturase Location: 2801-3 03 2 bp Feature: domain Description: HNHc Note: nucleases Location: 3263-3422 bp Feature: domain Description: HNHc Note: nucleases Location: 3 263 -3 422 bp Feature: gene Location: 3570-4304 bp Feature: RT Description: RVT_N Location: 3627-3864 bp Feature: RT Description: RVT_N Location: 3 627-3 864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3915-4281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 915-4281 bp Feature: gene Location: 4345-4485 bp Feature: gene Location: 5294-5575 bp Feature: domain Description: DinI Location: 5384-5564 bp Feature: domain Description: DinI Location: 53 84-5564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), DinI (pfam06183)