myRT

myRT report for GCA_009899425.1_ASM989942v1

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Seq: VTOP01000058.1 Escherichia coli strain EC33142 33142_S9-contig_58, whole genome shotgun sequence (8521 bp)
Overview 1 RT 1: 2-3151 bp Neighborhood of RT #1 [2, 3151] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-190 bp Feature: domain Description: PHA02517 Location: 5-125 bp Feature: domain Description: PHA0251 7 Location: 5-1 25 bp Feature: gene Location: 782-2305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 055-1 787 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2060 bp Feature: domain Description: GIIM Note: maturase Location: 1 862-2060 bp Feature: gene Location: 2482-2868 bp Feature: domain Description: PHA02517 Location: 2485-2866 bp Feature: domain Description: PHA0251 7 Location: 2485-2866 bp Feature: gene Location: 2852-3151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VTOP01000059.1 Escherichia coli strain EC33142 33142_S9-contig_59, whole genome shotgun sequence (253265 bp)
Overview 1 RT 1: 248860-252493 bp Neighborhood of RT #1 [248860, 253029] prfC SLATT_5 RVT-UG17 Feature: gene Location: 248860-250446 bp Feature: domain Description: prfC Location: 248878-250444 bp Feature: domain Description: prfC Location: 2 48878-2 50444 bp Feature: gene Location: 250977-251681 bp Feature: domain Description: SLATT_5 Location: 251139-251649 bp Feature: domain Description: SLATT_5 Location: 2 51139-2 51649 bp Feature: gene Location: 251659-253029 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 251887-252493 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 51887-2 52 493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17

Seq: VTOP01000070.1 Escherichia coli strain EC33142 33142_S9-contig_70, whole genome shotgun sequence (9510 bp)
Overview 1 RT 1: 3238-8693 bp Neighborhood of RT #1 [3238, 8695] PRK13699 DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 3238-3921 bp Feature: domain Description: PRK13699 Location: 3241-3919 bp Feature: domain Description: PRK13 699 Location: 3 241-3 919 bp Feature: gene Location: 4305-5207 bp Feature: domain Description: DUF1281 Location: 4374-4902 bp Feature: domain Description: DUF1281 Location: 43 74-4902 bp Feature: domain Description: DUF1281_C Location: 4908-5148 bp Feature: domain Description: DUF1281_C Location: 4908-5148 bp Feature: gene Location: 5284-7008 bp Feature: domain Description: RVT_N Location: 5341-5578 bp Feature: domain Description: RVT_N Location: 53 41-5578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5629-6277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5629-6277 bp Feature: domain Description: YkfC Location: 6409-6565 bp Feature: domain Description: YkfC Location: 6409-6565 bp Feature: domain Description: HNHc Note: nucleases Location: 6793-6952 bp Feature: domain Description: HNHc Note: nucleases Location: 6793 -6952 bp Feature: gene Location: 7998-8279 bp Feature: domain Description: DinI Location: 8088-8268 bp Feature: domain Description: DinI Location: 8088-8268 bp Feature: gene Location: 8276-8695 bp Feature: domain Description: PRK10276 Location: 8333-8693 bp Feature: domain Description: PRK10276 Location: 83 3 3 -8693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: VTOP01000085.1 Escherichia coli strain EC33142 33142_S9-contig_85, whole genome shotgun sequence (14557 bp)
Overview 1 RT 1: 8359-11410 bp Neighborhood of RT #1 [8359, 11535] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 8359-8778 bp Feature: domain Description: PHA02517 Location: 8362-8767 bp Feature: domain Description: PHA02517 Location: 8362-8767 bp Feature: gene Location: 8948-9079 bp Feature: gene Location: 9259-10071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9352-9931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9352-9931 bp Feature: gene Location: 9932-10948 bp Feature: domain Description: YkfC Location: 10628-10898 bp Feature: domain Description: YkfC Location: 10628-10898 bp Feature: gene Location: 11029-11535 bp Feature: domain Description: HlyC Location: 11050-11410 bp Feature: domain Description: HlyC Location: 11050-114 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)