myRT

myRT report for GCA_009899475.1_ASM989947v1

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Seq: VTOQ01000131.1 Escherichia coli strain EC34398 34398_S28-contig_131, whole genome shotgun sequence (46660 bp)
Overview 1 RT 1: 9274-13153 bp Neighborhood of RT #1 [9274, 13158] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9274-9732 bp Feature: domain Description: dut Location: 9280-9727 bp Feature: domain Description: dut Location: 9280-9727 bp Feature: gene Location: 9839-10435 bp Feature: domain Description: slmA Location: 9845-10421 bp Feature: domain Description: slmA Location: 9845-1 0421 bp Feature: gene Location: 10479-11438 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10614-11163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 061 4-1 1 1 63 bp Feature: gene Location: 11735-12391 bp Feature: domain Description: pyrE Location: 11753-12386 bp Feature: domain Description: pyrE Location: 1 1 753-1 2386 bp Feature: gene Location: 12442-13158 bp Feature: domain Description: rph Location: 12445-13153 bp Feature: domain Description: rph Location: 1 2445-1 31 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576), slmA (PRK09480)

Seq: VTOQ01000027.1 Escherichia coli strain EC34398 34398_S28-contig_27, whole genome shotgun sequence (41591 bp)
Overview 1 RT 1: 20950-24754 bp Neighborhood of RT #1 [20950, 24754] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 20950-21276 bp Feature: domain Description: InsE Location: 20956-21274 bp Feature: domain Description: InsE Location: 2 0956-2 12 74 bp Feature: gene Location: 21264-21755 bp Feature: domain Description: PHA02517 Location: 21336-21690 bp Feature: domain Description: PHA02 517 Location: 2 1336-2 1690 bp Feature: gene Location: 22347-23870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22620-23352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 62 0-2 3352 bp Feature: domain Description: GIIM Note: maturase Location: 23427-23625 bp Feature: domain Description: GIIM Note: maturase Location: 2 342 7-2 362 5 bp Feature: gene Location: 23987-24433 bp Feature: domain Description: PHA02517 Location: 23990-24431 bp Feature: domain Description: PHA02 517 Location: 2 3990-2 4431 bp Feature: gene Location: 24491-24754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VTOQ01000065.1 Escherichia coli strain EC34398 34398_S28-contig_65, whole genome shotgun sequence (3530 bp)
Overview 1 RT 1: 78-3340 bp Neighborhood of RT #1 [78, 3340] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 78-980 bp Feature: domain Description: DUF1281 Location: 147-675 bp Feature: domain Description: DUF1281 Location: 147-675 bp Feature: domain Description: DUF1281_C Location: 681-921 bp Feature: domain Description: DUF1281_C Location: 681-921 bp Feature: gene Location: 1057-2781 bp Feature: RT Description: RVT_N Location: 1114-1351 bp Feature: RT Description: RVT_N Location: 1114-13 51 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2050 bp Feature: domain Description: YkfC Location: 2182-2338 bp Feature: domain Description: YkfC Location: 2182-23 3 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2566-2725 bp Feature: domain Description: HNHc Note: nucleases Location: 2566-2725 bp Feature: gene Location: 2822-2962 bp Feature: gene Location: 3044-3340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: VTOQ01000079.1 Escherichia coli strain EC34398 34398_S28-contig_79, whole genome shotgun sequence (13948 bp)
Overview 1 RT 1: 3782-6947 bp Neighborhood of RT #1 [3782, 6958] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 3782-4288 bp Feature: domain Description: HlyC Location: 3803-4163 bp Feature: domain Description: HlyC Location: 3803-4 163 bp Feature: gene Location: 4369-5385 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: domain Description: YkfC Location: 5065-5335 bp Feature: gene Location: 5246-6058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5918 bp Feature: gene Location: 6231-6416 bp Feature: gene Location: 6539-6958 bp Feature: domain Description: PHA02517 Location: 6542-6947 bp Feature: domain Description: PHA02517 Location: 654 2-694 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)