myRT

myRT report for GCA_009899585.1_ASM989958v1

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Seq: WHNO01000002.1 Vibrio cholerae strain 1376_01 NODE_2_length_485916_cov_69.1776_ID_3, whole genome shotgun sequence (485916 bp)
Overview 1 RT 1: 122803-127815 bp Neighborhood of RT #1 [122803, 127815] TIGR02646 COG3950 RVT-Retrons PRK10621 Feature: gene Location: 122803-123420 bp Feature: domain Description: TIGR02646 Location: 122914-123298 bp Feature: domain Description: TIGR02646 Location: 1 2291 4-1 23298 bp Feature: gene Location: 123433-125055 bp Feature: domain Description: COG3950 Location: 123619-125050 bp Feature: domain Description: COG3950 Location: 1 2361 9-1 25050 bp Feature: gene Location: 125056-126003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125170-125767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 251 70-1 25767 bp Feature: gene Location: 126534-127319 bp Feature: domain Description: PRK10621 Location: 126543-127314 bp Feature: domain Description: PRK1 0621 Location: 1 26543-1 2731 4 bp Feature: gene Location: 127642-127815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK10621 (hypothetical protein; Provisional)

Seq: WHNO01000004.1 Vibrio cholerae strain 1376_01 NODE_4_length_263447_cov_72.8053_ID_7, whole genome shotgun sequence (263447 bp)
Overview 1 RT 1: 185743-189513 bp Neighborhood of RT #1 [185743, 189542] RVT-UG4 PRK09776 PAS_9 PleD Feature: gene Location: 185743-186450 bp Feature: gene Location: 186344-186598 bp Feature: gene Location: 186645-187319 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 186963-187218 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 186963-1872 18 bp Feature: gene Location: 187374-187916 bp Feature: gene Location: 188271-189542 bp Feature: domain Description: PRK09776 Location: 188379-188685 bp Feature: domain Description: PRK09776 Location: 188379-188685 bp Feature: domain Description: PAS_9 Location: 188703-189009 bp Feature: domain Description: PAS_9 Location: 188703-189009 bp Feature: domain Description: PleD Location: 189009-189513 bp Feature: domain Description: PleD Location: 189009-189513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706)