myRT

myRT report for GCA_009902295.1_ASM990229v1

Download annotations/find similar RTs

Seq: RPES01000093.1 Klebsiella pneumoniae strain CL1549 NODE_108_length_1892_cov_365.442, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPES01000107.1 Klebsiella pneumoniae strain CL1549 NODE_127_length_1516_cov_2.13679, whole genome shotgun sequence (1516 bp)
Overview 1 RT 1: 3-1515 bp Neighborhood of RT #1 [3, 1514] RVT-UNC RNase_HI_RT_Ty3 RNase_HI_like Feature: gene Location: 3-1514 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 246-384 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 46-384 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 711-1062 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 711-1062 bp Feature: domain Description: RNase_HI_like Location: 1152-1515 bp Feature: domain Description: RNase_HI_like Location: 1152 -1515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-UG20/RVT-GII(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), RNase_HI_like (cd09279)

Seq: RPES01000041.1 Klebsiella pneumoniae strain CL1549 NODE_41_length_24515_cov_36.8927, whole genome shotgun sequence (24515 bp)
Overview 1 RT 1: 671-6478 bp Neighborhood of RT #1 [671, 7008] AAA_15 RVT-Retrons STKc_PknB_like Feature: gene Location: 671-976 bp Feature: gene Location: 1855-4131 bp Feature: domain Description: AAA_15 Location: 1888-2896 bp Feature: domain Description: AAA_15 Location: 1888-2896 bp Feature: gene Location: 4246-5346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4426-4960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4426-4960 bp Feature: gene Location: 5599-5835 bp Feature: gene Location: 5905-7008 bp Feature: domain Description: STKc_PknB_like Location: 6037-6478 bp Feature: domain Description: STKc_PknB_like Location: 603 7-6478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014)

Seq: RPES01000053.1 Klebsiella pneumoniae strain CL1549 NODE_53_length_13922_cov_31.33, whole genome shotgun sequence (13922 bp)
Overview 1 RT 1: 7312-10365 bp Neighborhood of RT #1 [7312, 10365] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 7312-7734 bp Feature: domain Description: DUF1380 Location: 7315-7609 bp Feature: domain Description: DUF1380 Location: 7315-7609 bp Feature: gene Location: 7731-7922 bp Feature: gene Location: 8236-9903 bp Feature: domain Description: RVT_N Location: 8284-8521 bp Feature: domain Description: RVT_N Location: 8284 -8521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8572-9214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8572-9214 bp Feature: domain Description: GIIM Note: maturase Location: 9265-9499 bp Feature: domain Description: GIIM Note: maturase Location: 9265-94 99 bp Feature: domain Description: HNHc Note: nucleases Location: 9709-9868 bp Feature: domain Description: HNHc Note: nucleases Location: 9709-9868 bp Feature: gene Location: 9940-10086 bp Feature: gene Location: 10183-10365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RPES01000077.1 Klebsiella pneumoniae strain CL1549 NODE_84_length_3882_cov_2.18908, whole genome shotgun sequence (3882 bp)
Overview 1 RT 1: 4-3343 bp Neighborhood of RT #1 [4, 3879] RT_LTR RVT-UG20 RT_RNaseH_2 RNase_HI_like Integrase_H2C2 rve Feature: gene Location: 4-3879 bp Feature: domain Description: RT_LTR Location: 637-784 bp Feature: domain Description: RT_LTR Location: 637-784 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 1207-1333 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 1207-1333 bp Feature: domain Description: RT_RNaseH_2 Location: 1564-1858 bp Feature: domain Description: RT_RNaseH_2 Location: 15 64-185 8 bp Feature: domain Description: RNase_HI_like Location: 2101-2500 bp Feature: domain Description: RNase_HI_like Location: 2101-25 00 bp Feature: domain Description: Integrase_H2C2 Location: 2794-2953 bp Feature: domain Description: Integrase_H2C2 Location: 2794-295 3 bp Feature: domain Description: rve Location: 3010-3343 bp Feature: domain Description: rve Location: 3010-3343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_LTR (cd01647), RVT-UG20, RT_RNaseH_2 (pfam17919), RNase_HI_like (cd09279), Integrase_H2C2 (pfam17921), rve (pfam00665)