myRT

myRT report for GCA_009902845.1_ASM990284v1

Download annotations/find similar RTs

Seq: VCKS01000545.1 Salmonella sp. hn-f5 contig1446, whole genome shotgun sequence (231 bp)
Overview 1 RT 1: 3-216 bp Neighborhood of RT #1 [3, 230] RVT-UNC Feature: gene Location: 3-230 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 63-216 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 63-21 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3/RVT-UG26/RVT-UG19/RVT-UG17(RVT-UNC)

Seq: VCKS01000018.1 Salmonella sp. hn-f5 contig23, whole genome shotgun sequence (1176 bp)
Overview 1 RT 1: 2-1175 bp Neighborhood of RT #1 [2, 1174] RVT-UG26 RT_RNaseH_2 Feature: gene Location: 2-1174 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 581-758 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 581-758 bp Feature: domain Description: RT_RNaseH_2 Location: 983-1175 bp Feature: domain Description: RT_RNaseH_2 Location: 983-1175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RT_RNaseH_2 (pfam17919)

Seq: VCKS01000133.1 Salmonella sp. hn-f5 contig235, whole genome shotgun sequence (358 bp)
Overview 1 RT 1: 2-317 bp Neighborhood of RT #1 [2, 355] RVT-UNC Feature: gene Location: 2-355 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 167-317 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 167-3 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons/RVT-UG19/RVT-UG7/RVT-UG10(RVT-UNC)

Seq: VCKS01000147.1 Salmonella sp. hn-f5 contig260, whole genome shotgun sequence (343 bp)
Overview 1 RT 1: 3-330 bp Neighborhood of RT #1 [3, 341] RVT-UNC Feature: gene Location: 3-341 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 147-330 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 14 7-330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG25/RVT-G2Lb/RVT-UG11(RVT-UNC)

Seq: VCKS01000152.1 Salmonella sp. hn-f5 contig265, whole genome shotgun sequence (339 bp)
Overview 1 RT 1: 1-328 bp Neighborhood of RT #1 [1, 336] RVT-UNC Feature: gene Location: 1-336 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 121-328 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 121-328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG26/RVT-UG19/RVT-UG17(RVT-UNC)

Seq: VCKS01000003.1 Salmonella sp. hn-f5 contig3, whole genome shotgun sequence (718005 bp)
Overview 1 RT 1: 670757-674026 bp Neighborhood of RT #1 [670757, 674037] TIR-like RVT-Retrons InsE Feature: gene Location: 670757-671131 bp Feature: gene Location: 671197-672057 bp Feature: domain Description: TIR-like Location: 671623-671977 bp Feature: domain Description: TIR-like Location: 6 716 23-6 71977 bp Feature: gene Location: 672086-673045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 672266-672788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 7226 6 -6 72788 bp Feature: gene Location: 673076-673303 bp Feature: gene Location: 673735-674037 bp Feature: domain Description: InsE Location: 673744-674026 bp Feature: domain Description: InsE Location: 6 73744-6 74026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: VCKS01000024.1 Salmonella sp. hn-f5 contig30, whole genome shotgun sequence (1256 bp)
Overview 1 RT 1: 2-1250 bp Neighborhood of RT #1 [2, 1255] RVT-UG11 RT_RNaseH_2 Feature: gene Location: 2-1255 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 683-824 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 683-824 bp Feature: domain Description: RT_RNaseH_2 Location: 1058-1250 bp Feature: domain Description: RT_RNaseH_2 Location: 1058-1250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, RT_RNaseH_2 (pfam17919)