myRT

myRT report for GCA_009902925.1_ASM990292v1

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Seq: VCKT01000112.1 Salmonella sp. gx-f8 contig174, whole genome shotgun sequence (431 bp)
Overview 1 RT 1: 22-423 bp Neighborhood of RT #1 [22, 428] RT_LTR RVT-UNC Feature: gene Location: 22-264 bp Feature: domain Description: RT_LTR Location: 31-256 bp Feature: domain Description: RT_LTR Location: 31 -256 bp Feature: gene Location: 270-428 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 309-423 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 309-423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_LTR (cd01647), RVT-UG11/RVT-UG26/RVT-UG19/RVT-UG10(RVT-UNC)

Seq: VCKT01000003.1 Salmonella sp. gx-f8 contig3, whole genome shotgun sequence (755134 bp)
Overview 1 RT 1: 223669-230522 bp 2 RT 2: 707886-711155 bp Neighborhood of RT #1 [223669, 230524] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [707886, 711166] TIR-like RVT-Retrons InsE Feature: gene Location: 223669-224214 bp Feature: gene Location: 224217-225917 bp Feature: domain Description: 5 Location: 225441-225735 bp Feature: domain Description: 5 Location: 2 2 5441-2 2 5735 bp Feature: gene Location: 226824-227588 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 226947-227400 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 2 6947-2 2 7400 bp Feature: gene Location: 227912-228418 bp Feature: domain Description: PRK10201 Location: 227915-228413 bp Feature: domain Description: PRK102 01 Location: 2 2 7915-2 2 8413 bp Feature: gene Location: 228542-230524 bp Feature: domain Description: PRK05658 Location: 228680-230522 bp Feature: domain Description: PRK05658 Location: 2 2 8680-2 3052 2 bp Feature: gene Location: 707886-708260 bp Feature: gene Location: 708326-709186 bp Feature: domain Description: TIR-like Location: 708752-709106 bp Feature: domain Description: TIR-like Location: 708752 -709106 bp Feature: gene Location: 709215-710174 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 709395-709917 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 709395-709917 bp Feature: gene Location: 710205-710432 bp Feature: gene Location: 710864-711166 bp Feature: domain Description: InsE Location: 710873-711155 bp Feature: domain Description: InsE Location: 710873-711155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: VCKT01000250.1 Salmonella sp. gx-f8 contig425, whole genome shotgun sequence (326 bp)
Overview 1 RT 1: 2-269 bp Neighborhood of RT #1 [2, 325] RVT-UNC Feature: gene Location: 2-325 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 149-269 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 149-269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-G2Lb/RVT-UG11(RVT-UNC)