myRT

myRT report for GCA_009902995.1_ASM990299v1

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Seq: PGSM01000111.1 Pseudomonas syringae pv. actinidifoliorum strain MAFF 212159 212159-PsafL5_contig_111, whole genome shotgun sequence (27980 bp)
Overview 1 RT 1: 1284-6180 bp Neighborhood of RT #1 [1284, 6180] Zn_Tnp_IS91 Y2_Tnp RVT-GII HopW1-1 Feature: gene Location: 1284-1610 bp Feature: gene Location: 1738-2544 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1822-2089 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 822-2089 bp Feature: domain Description: Y2_Tnp Location: 2272-2521 bp Feature: domain Description: Y2_Tnp Location: 2272-2521 bp Feature: gene Location: 3482-3661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3485-3650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3485-3650 bp Feature: gene Location: 3875-5782 bp Feature: domain Description: HopW1-1 Location: 3878-4820 bp Feature: domain Description: HopW1 -1 Location: 3878-4820 bp Feature: gene Location: 5440-6180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-GII, HopW1-1 (pfam15457)

Seq: PGSM01000012.1 Pseudomonas syringae pv. actinidifoliorum strain MAFF 212159 212159-PsafL5_contig_12, whole genome shotgun sequence (4256 bp)
Overview 1 RT 1: 766-4254 bp Neighborhood of RT #1 [766, 4254] SIRT5_Af1_CobB RVT-UG15 Feature: gene Location: 766-1101 bp Feature: gene Location: 1355-2134 bp Feature: domain Description: SIRT5_Af1_CobB Location: 1409-2096 bp Feature: domain Description: SIRT5_Af1_CobB Location: 1409-2 096 bp Feature: gene Location: 2415-4061 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2862-3273 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2 862 -32 73 bp Feature: gene Location: 4126-4254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIRT5_Af1_CobB (cd01412), RVT-UG15

Seq: PGSM01000017.1 Pseudomonas syringae pv. actinidifoliorum strain MAFF 212159 212159-PsafL5_contig_17, whole genome shotgun sequence (1895 bp)
Overview 1 RT 1: 56-1894 bp Neighborhood of RT #1 [56, 1894] RVT-GII GIIM Feature: gene Location: 56-1423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 89-1004 bp Feature: domain Description: GIIM Note: maturase Location: 1061-1289 bp Feature: domain Description: GIIM Note: maturase Location: 1061-1289 bp Feature: gene Location: 1754-1894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSM01000070.1 Pseudomonas syringae pv. actinidifoliorum strain MAFF 212159 212159-PsafL5_contig_70, whole genome shotgun sequence (7260 bp)
Overview 1 RT 1: 1733-7090 bp Neighborhood of RT #1 [1733, 7206] PLDc_Bfil_DEXD_like RVT-UG12 DUF4209 Feature: gene Location: 1733-2707 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1781-2081 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1781-2081 bp Feature: gene Location: 2849-3382 bp Feature: gene Location: 3473-5188 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3806-4265 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3806-4 265 bp Feature: gene Location: 5290-7206 bp Feature: domain Description: DUF4209 Location: 6823-7090 bp Feature: domain Description: DUF4 209 Location: 6823-7090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_Bfil_DEXD_like (cd09117), RVT-UG12, DUF4209 (pfam13910)

Seq: PGSM01000096.1 Pseudomonas syringae pv. actinidifoliorum strain MAFF 212159 212159-PsafL5_contig_96, whole genome shotgun sequence (47575 bp)
Overview 1 RT 1: 2-3733 bp Neighborhood of RT #1 [2, 3733] RVT-UG17 SLATT_5 Feature: gene Location: 2-1144 bp Feature: gene Location: 1420-2784 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1648-2251 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1648-225 1 bp Feature: gene Location: 2781-3410 bp Feature: domain Description: SLATT_5 Location: 2853-3381 bp Feature: domain Description: SLATT_5 Location: 285 3-3381 bp Feature: gene Location: 3416-3733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)