myRT

myRT report for GCA_009903105.1_ASM990310v1

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Seq: PGSO01000137.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_137, whole genome shotgun sequence (4710 bp)
Overview 1 RT 1: 1550-3822 bp Neighborhood of RT #1 [1550, 4574] UvrD_C RVT-UG9 Feature: gene Location: 1550-2494 bp Feature: gene Location: 2855-3445 bp Feature: domain Description: UvrD_C Location: 3179-3374 bp Feature: domain Description: UvrD_C Location: 31 79-3374 bp Feature: gene Location: 3543-4574 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3549-3822 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3549-3822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: PGSO01000182.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_182, whole genome shotgun sequence (2731 bp)
Overview 1 RT 1: 169-2384 bp Neighborhood of RT #1 [169, 2384] RVT-Retrons Feature: gene Location: 169-330 bp Feature: gene Location: 416-2080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 524-1121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 4-112 1 bp Feature: gene Location: 2097-2237 bp Feature: gene Location: 2250-2384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PGSO01000024.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_24, whole genome shotgun sequence (1922 bp)
Overview 1 RT 1: 480-1713 bp Neighborhood of RT #1 [480, 1847] RVT-GII GIIM Feature: gene Location: 480-1847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813 -1428 bp Feature: domain Description: GIIM Note: maturase Location: 1485-1713 bp Feature: domain Description: GIIM Note: maturase Location: 1485-1713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSO01000055.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_55, whole genome shotgun sequence (1884 bp)
Overview 1 RT 1: 79-1883 bp Neighborhood of RT #1 [79, 1883] RVT-GII GIIM Feature: gene Location: 79-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-94 0 bp Feature: domain Description: GIIM Note: maturase Location: 1018-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1018-124 0 bp Feature: gene Location: 1728-1883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSO01000078.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_78, whole genome shotgun sequence (4211 bp)
Overview 1 RT 1: 899-3958 bp Neighborhood of RT #1 [899, 4020] DUF2625 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 899-1747 bp Feature: domain Description: DUF2625 Location: 1124-1712 bp Feature: domain Description: DUF2625 Location: 1124-1712 bp Feature: gene Location: 1754-1945 bp Feature: gene Location: 2185-4020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446-3259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446-325 9 bp Feature: domain Description: Intron_maturas2 Location: 3355-3670 bp Feature: domain Description: Intron_maturas2 Location: 335 5 -3670 bp Feature: domain Description: HNHc Note: nucleases Location: 3793-3958 bp Feature: domain Description: HNHc Note: nucleases Location: 3793-395 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PGSO01000083.1 Pseudomonas syringae pv. actinidiae strain MAFF 212115 212115_contig_83, whole genome shotgun sequence (1928 bp)
Overview 1 RT 1: 141-1925 bp Neighborhood of RT #1 [141, 1925] RVT-GII GIIM Feature: gene Location: 141-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-999 bp Feature: domain Description: GIIM Note: maturase Location: 1044-1254 bp Feature: domain Description: GIIM Note: maturase Location: 1044-1254 bp Feature: gene Location: 1584-1925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)