myRT

myRT report for GCA_009903115.1_ASM990311v1

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Seq: PHQZ01000113.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_113, whole genome shotgun sequence (2365 bp)
Overview 1 RT 1: 3-2363 bp Neighborhood of RT #1 [3, 2363] TnpB_IS66 RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: gene Location: 146-349 bp Feature: domain Description: TnpB_IS66 Location: 170-314 bp Feature: domain Description: TnpB_IS66 Location: 1 70-31 4 bp Feature: gene Location: 383-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-1244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-1 244 bp Feature: domain Description: GIIM Note: maturase Location: 1322-1544 bp Feature: domain Description: GIIM Note: maturase Location: 1 322-1 544 bp Feature: gene Location: 2032-2190 bp Feature: gene Location: 2214-2363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: PHQZ01000205.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_205, whole genome shotgun sequence (1889 bp)
Overview 1 RT 1: 84-1886 bp Neighborhood of RT #1 [84, 1886] RVT-GII GIIM Feature: gene Location: 84-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 7-942 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Feature: domain Description: GIIM Note: maturase Location: 987-1197 bp Feature: gene Location: 1593-1886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PHQZ01000227.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_227, whole genome shotgun sequence (12081 bp)
Overview 1 RT 1: 1025-6988 bp Neighborhood of RT #1 [1025, 6996] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1025-1660 bp Feature: domain Description: DUF2625 Location: 1037-1625 bp Feature: domain Description: DUF2625 Location: 103 7-1625 bp Feature: gene Location: 1667-1858 bp Feature: gene Location: 2098-3933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359-3172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 59-3 172 bp Feature: domain Description: Intron_maturas2 Location: 3268-3583 bp Feature: domain Description: Intron_maturas2 Location: 3 268-3 583 bp Feature: domain Description: HNHc Note: nucleases Location: 3706-3871 bp Feature: domain Description: HNHc Note: nucleases Location: 3 706-3 871 bp Feature: gene Location: 4764-5819 bp Feature: domain Description: Top1 Location: 4797-5811 bp Feature: domain Description: Top1 Location: 4797-5811 bp Feature: gene Location: 5908-6996 bp Feature: domain Description: modC_ABC Location: 5923-6988 bp Feature: domain Description: modC_ABC Location: 5923 -6988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PHQZ01000034.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_34, whole genome shotgun sequence (26468 bp)
Overview 1 RT 1: 22282-26100 bp Neighborhood of RT #1 [22282, 26100] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 22282-23700 bp Feature: domain Description: ComA-like_MBL-fold Location: 22831-23317 bp Feature: domain Description: ComA-like_MBL-fold Location: 22831-23317 bp Feature: gene Location: 23885-24019 bp Feature: gene Location: 24144-25853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24297-24894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 297-24 894 bp Feature: gene Location: 25939-26100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: PHQZ01000068.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_68, whole genome shotgun sequence (1988 bp)
Overview 1 RT 1: 257-1905 bp Neighborhood of RT #1 [257, 1976] RVT-UG9 UvrD_C Feature: gene Location: 257-1288 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 263-536 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 263-5 36 bp Feature: gene Location: 1386-1976 bp Feature: domain Description: UvrD_C Location: 1710-1905 bp Feature: domain Description: UvrD_C Location: 1710-1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PHQZ01000092.1 Pseudomonas syringae pv. actinidiae strain MAFF 212118 212118-Psa3_contig_92, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 436-1669 bp Neighborhood of RT #1 [436, 1803] RVT-GII GIIM Feature: gene Location: 436-1803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 9-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1669 bp Feature: domain Description: GIIM Note: maturase Location: 1441-16 6 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)