myRT

myRT report for GCA_009903125.1_ASM990312v1

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Seq: PGSP01000107.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_107, whole genome shotgun sequence (889 bp)
Overview 1 RT 1: 1-679 bp Neighborhood of RT #1 [1, 813] RVT-GII GIIM Feature: gene Location: 1-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-394 bp Feature: domain Description: GIIM Note: maturase Location: 451-679 bp Feature: domain Description: GIIM Note: maturase Location: 451 -679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSP01000132.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_132, whole genome shotgun sequence (1803 bp)
Overview 1 RT 1: 2-1801 bp Neighborhood of RT #1 [2, 1801] RVT-GII GIIM Feature: gene Location: 2-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45-860 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: gene Location: 1484-1801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSP01000142.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_142, whole genome shotgun sequence (20023 bp)
Overview 1 RT 1: 1141-7104 bp Neighborhood of RT #1 [1141, 7112] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1141-1776 bp Feature: domain Description: DUF2625 Location: 1153-1741 bp Feature: domain Description: DUF2625 Location: 1153 -1741 bp Feature: gene Location: 1783-1974 bp Feature: gene Location: 2214-4049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3 288 bp Feature: domain Description: Intron_maturas2 Location: 3384-3699 bp Feature: domain Description: Intron_maturas2 Location: 3 3 84-3 699 bp Feature: domain Description: HNHc Note: nucleases Location: 3822-3987 bp Feature: domain Description: HNHc Note: nucleases Location: 3 822-3 987 bp Feature: gene Location: 4880-5935 bp Feature: domain Description: Top1 Location: 4913-5927 bp Feature: domain Description: Top1 Location: 4913 -5927 bp Feature: gene Location: 6024-7112 bp Feature: domain Description: modC_ABC Location: 6039-7104 bp Feature: domain Description: modC_ABC Location: 603 9-7104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSP01000181.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_181, whole genome shotgun sequence (11894 bp)
Overview 1 RT 1: 1-4910 bp Neighborhood of RT #1 [1, 5293] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 1-1224 bp Feature: domain Description: COG3666 Location: 43-484 bp Feature: domain Description: COG3666 Location: 4 3-4 84 bp Feature: domain Description: DDE_Tnp_1_6 Location: 961-1183 bp Feature: domain Description: DDE_Tnp_1_6 Location: 961-1183 bp Feature: gene Location: 1475-1636 bp Feature: gene Location: 1722-3431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1875-2472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1875-24 72 bp Feature: gene Location: 3556-3690 bp Feature: gene Location: 3875-5293 bp Feature: domain Description: ComA-like_MBL-fold Location: 4424-4910 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 4 24 -4 910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PGSP01000020.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_20, whole genome shotgun sequence (1671 bp)
Overview 1 RT 1: 59-1220 bp Neighborhood of RT #1 [59, 1327] RVT-GII GIIM Feature: gene Location: 59-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263-920 bp Feature: domain Description: GIIM Note: maturase Location: 998-1220 bp Feature: domain Description: GIIM Note: maturase Location: 998-1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSP01000250.1 Pseudomonas syringae pv. actinidiae strain MAFF 212101 212101_contig_250, whole genome shotgun sequence (4703 bp)
Overview 1 RT 1: 137-3161 bp Neighborhood of RT #1 [137, 3161] RVT-UG9 UvrD_C Feature: gene Location: 137-1168 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 143-416 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 143-416 bp Feature: gene Location: 1266-1856 bp Feature: domain Description: UvrD_C Location: 1590-1785 bp Feature: domain Description: UvrD_C Location: 1590-1785 bp Feature: gene Location: 2217-3161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)