myRT

myRT report for GCA_009903135.1_ASM990313v1

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Seq: PGSQ01000110.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_110, whole genome shotgun sequence (36776 bp)
Overview 1 RT 1: 29583-35519 bp Neighborhood of RT #1 [29583, 35554] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29583-30671 bp Feature: domain Description: modC_ABC Location: 29598-30663 bp Feature: domain Description: modC_ABC Location: 29598-30663 bp Feature: gene Location: 30760-31815 bp Feature: domain Description: Top1 Location: 30793-31807 bp Feature: domain Description: Top1 Location: 30793-31 807 bp Feature: gene Location: 32646-34481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32907-33720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32907-33720 bp Feature: domain Description: Intron_maturas2 Location: 33816-34131 bp Feature: domain Description: Intron_maturas2 Location: 3381 6-341 31 bp Feature: domain Description: HNHc Note: nucleases Location: 34254-34419 bp Feature: domain Description: HNHc Note: nucleases Location: 34254-3441 9 bp Feature: gene Location: 34721-34912 bp Feature: gene Location: 34919-35554 bp Feature: domain Description: DUF2625 Location: 34931-35519 bp Feature: domain Description: DUF2625 Location: 34931 -3551 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: PGSQ01000121.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_121, whole genome shotgun sequence (1842 bp)
Overview 1 RT 1: 1-1615 bp Neighborhood of RT #1 [1, 1803] RVT-GII GIIM Feature: gene Location: 1-279 bp Feature: gene Location: 505-1803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSQ01000182.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_182, whole genome shotgun sequence (5106 bp)
Overview 1 RT 1: 1945-4217 bp Neighborhood of RT #1 [1945, 4969] UvrD_C RVT-UG9 Feature: gene Location: 1945-2889 bp Feature: gene Location: 3250-3840 bp Feature: domain Description: UvrD_C Location: 3574-3769 bp Feature: domain Description: UvrD_C Location: 3 574-3 769 bp Feature: gene Location: 3938-4969 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3944-4217 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 944-4217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: PGSQ01000044.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_44, whole genome shotgun sequence (1986 bp)
Overview 1 RT 1: 1-1902 bp Neighborhood of RT #1 [1, 1949] RVT-GII GIIM DDE_Tnp_1_6 Feature: gene Location: 1-378 bp Feature: gene Location: 375-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579-1236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579-1236 bp Feature: domain Description: GIIM Note: maturase Location: 1314-1536 bp Feature: domain Description: GIIM Note: maturase Location: 1314 -1536 bp Feature: gene Location: 1677-1949 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1713-1902 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1713-1902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751)

Seq: PGSQ01000090.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_90, whole genome shotgun sequence (46123 bp)
Overview 1 RT 1: 3-5882 bp Neighborhood of RT #1 [3, 5882] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 3-1196 bp Feature: domain Description: COG3666 Location: 45-486 bp Feature: domain Description: COG3666 Location: 45 -486 bp Feature: domain Description: DDE_Tnp_1_6 Location: 963-1182 bp Feature: domain Description: DDE_Tnp_1_6 Location: 963-1182 bp Feature: gene Location: 1447-1608 bp Feature: gene Location: 1694-3403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1847-2444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1847-2444 bp Feature: gene Location: 3847-5265 bp Feature: domain Description: ComA-like_MBL-fold Location: 4396-4882 bp Feature: domain Description: ComA-like_MBL-fold Location: 4396-4882 bp Feature: gene Location: 5619-5882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PGSQ01000094.1 Pseudomonas syringae pv. actinidiae strain MAFF 212111 212111_contig_94, whole genome shotgun sequence (2012 bp)
Overview 1 RT 1: 13-1520 bp Neighborhood of RT #1 [13, 1654] RVT-GII GIIM Feature: gene Location: 13-252 bp Feature: gene Location: 287-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 20-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1292-1520 bp Feature: domain Description: GIIM Note: maturase Location: 1292-1520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)