myRT

myRT report for GCA_009903185.1_ASM990318v1

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Seq: PGSR01000107.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_107, whole genome shotgun sequence (1795 bp)
Overview 1 RT 1: 2-1792 bp Neighborhood of RT #1 [2, 1792] RVT-GII GIIM Feature: gene Location: 2-1228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-860 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: domain Description: GIIM Note: maturase Location: 905-1 1 1 5 bp Feature: gene Location: 1385-1792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSR01000135.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_135, whole genome shotgun sequence (46123 bp)
Overview 1 RT 1: 40859-46107 bp Neighborhood of RT #1 [40859, 46121] ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 40859-42277 bp Feature: domain Description: ComA-like_MBL-fold Location: 41408-41894 bp Feature: domain Description: ComA-like_MBL-fold Location: 41408-41894 bp Feature: gene Location: 42462-42596 bp Feature: gene Location: 42721-44430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42874-43471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 874-43471 bp Feature: gene Location: 44516-44677 bp Feature: gene Location: 44928-46121 bp Feature: domain Description: COG3666 Location: 44970-45411 bp Feature: domain Description: COG3666 Location: 44970-45411 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45888-46107 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45888-46107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: PGSR01000146.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_146, whole genome shotgun sequence (36958 bp)
Overview 1 RT 1: 1111-7074 bp Neighborhood of RT #1 [1111, 7082] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1111-1746 bp Feature: domain Description: DUF2625 Location: 1123-1711 bp Feature: domain Description: DUF2625 Location: 1123 -1711 bp Feature: gene Location: 1753-1944 bp Feature: gene Location: 2184-4019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2445-3258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2445-3 258 bp Feature: domain Description: Intron_maturas2 Location: 3354-3669 bp Feature: domain Description: Intron_maturas2 Location: 3 3 54-3 669 bp Feature: domain Description: HNHc Note: nucleases Location: 3792-3957 bp Feature: domain Description: HNHc Note: nucleases Location: 3 792-3 957 bp Feature: gene Location: 4850-5905 bp Feature: domain Description: Top1 Location: 4883-5897 bp Feature: domain Description: Top1 Location: 4883 -5897 bp Feature: gene Location: 5994-7082 bp Feature: domain Description: modC_ABC Location: 6009-7074 bp Feature: domain Description: modC_ABC Location: 6009-7074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSR01000155.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_155, whole genome shotgun sequence (5335 bp)
Overview 1 RT 1: 138-3162 bp Neighborhood of RT #1 [138, 3162] RVT-UG9 UvrD_C Feature: gene Location: 138-1169 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 144-417 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 14 4 -4 17 bp Feature: gene Location: 1267-1857 bp Feature: domain Description: UvrD_C Location: 1591-1786 bp Feature: domain Description: UvrD_C Location: 1591-1786 bp Feature: gene Location: 2218-3162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PGSR01000081.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_81, whole genome shotgun sequence (1967 bp)
Overview 1 RT 1: 116-1349 bp Neighborhood of RT #1 [116, 1483] RVT-GII GIIM Feature: gene Location: 116-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1064 bp Feature: domain Description: GIIM Note: maturase Location: 1121-1349 bp Feature: domain Description: GIIM Note: maturase Location: 1121-1349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSR01000086.1 Pseudomonas syringae pv. actinidiae strain psa142004 Psa3-142004_contig_86, whole genome shotgun sequence (1776 bp)
Overview 1 RT 1: 140-1773 bp Neighborhood of RT #1 [140, 1773] RVT-GII GIIM Feature: gene Location: 140-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-1001 bp Feature: domain Description: GIIM Note: maturase Location: 1079-1301 bp Feature: domain Description: GIIM Note: maturase Location: 1079-1301 bp Feature: gene Location: 1405-1773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)