myRT

myRT report for GCA_009903205.1_ASM990320v1

Download annotations/find similar RTs

Seq: PGST01000012.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_12, whole genome shotgun sequence (9013 bp)
Overview 1 RT 1: 147-5056 bp Neighborhood of RT #1 [147, 5439] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 147-1370 bp Feature: domain Description: COG3666 Location: 189-630 bp Feature: domain Description: COG3666 Location: 1 89-630 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1107-1329 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 1 07-1 329 bp Feature: gene Location: 1621-1782 bp Feature: gene Location: 1868-3577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2021-2618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2021 -261 8 bp Feature: gene Location: 3702-3836 bp Feature: gene Location: 4021-5439 bp Feature: domain Description: ComA-like_MBL-fold Location: 4570-5056 bp Feature: domain Description: ComA-like_MBL-fold Location: 4570-5056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PGST01000017.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_17, whole genome shotgun sequence (740 bp)
Overview 1 RT 1: 19-610 bp Neighborhood of RT #1 [19, 633] RVT-GII group_II_RT_mat Feature: gene Location: 19-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82-190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 -190 bp Feature: gene Location: 322-633 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 469-610 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 469-610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: PGST01000207.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_207, whole genome shotgun sequence (4914 bp)
Overview 1 RT 1: 286-3311 bp Neighborhood of RT #1 [286, 3311] RVT-UG9 UvrD_C Feature: gene Location: 286-1317 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 292-565 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 292-565 bp Feature: gene Location: 1415-1936 bp Feature: domain Description: UvrD_C Location: 1739-1919 bp Feature: domain Description: UvrD_C Location: 173 9-1919 bp Feature: gene Location: 2367-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PGST01000256.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_256, whole genome shotgun sequence (20071 bp)
Overview 1 RT 1: 1119-7082 bp Neighborhood of RT #1 [1119, 7090] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1119-1754 bp Feature: domain Description: DUF2625 Location: 1131-1719 bp Feature: domain Description: DUF2625 Location: 1131-1719 bp Feature: gene Location: 1761-1952 bp Feature: gene Location: 2192-4027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2453-3266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 53-3266 bp Feature: domain Description: Intron_maturas2 Location: 3362-3677 bp Feature: domain Description: Intron_maturas2 Location: 3362-3677 bp Feature: domain Description: HNHc Note: nucleases Location: 3800-3965 bp Feature: domain Description: HNHc Note: nucleases Location: 3800-3965 bp Feature: gene Location: 4858-5913 bp Feature: domain Description: Top1 Location: 4891-5905 bp Feature: domain Description: Top1 Location: 4 891-5905 bp Feature: gene Location: 6002-7090 bp Feature: domain Description: modC_ABC Location: 6017-7082 bp Feature: domain Description: modC_ABC Location: 6017-7082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGST01000005.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_5, whole genome shotgun sequence (1962 bp)
Overview 1 RT 1: 1-1400 bp Neighborhood of RT #1 [1, 1534] RVT-GII GIIM Feature: gene Location: 1-132 bp Feature: gene Location: 167-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 00-1115 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGST01000053.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_53, whole genome shotgun sequence (2037 bp)
Overview 1 RT 1: 161-1990 bp Neighborhood of RT #1 [161, 1990] RVT-GII GIIM Feature: gene Location: 161-1447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1019 bp Feature: domain Description: GIIM Note: maturase Location: 1064-1274 bp Feature: domain Description: GIIM Note: maturase Location: 106 4-1274 bp Feature: gene Location: 1670-1990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGST01000054.1 Pseudomonas syringae pv. actinidiae strain psa142049 Psa3-142049_contig_54, whole genome shotgun sequence (1927 bp)
Overview 1 RT 1: 2-1699 bp Neighborhood of RT #1 [2, 1806] RVT-GII GIIM Feature: gene Location: 2-157 bp Feature: gene Location: 538-1806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 42-1399 bp Feature: domain Description: GIIM Note: maturase Location: 1477-1699 bp Feature: domain Description: GIIM Note: maturase Location: 147 7 -1699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)