myRT

myRT report for GCA_009903215.1_ASM990321v1

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Seq: PGSU01000102.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_102, whole genome shotgun sequence (5957 bp)
Overview 1 RT 1: 3-1616 bp Neighborhood of RT #1 [3, 1999] RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 3-680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 156-618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 56-61 8 bp Feature: gene Location: 805-939 bp Feature: gene Location: 1124-1999 bp Feature: domain Description: ComA-like_MBL-fold Location: 1130-1616 bp Feature: domain Description: ComA-like_MBL-fold Location: 1 1 30-1 61 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PGSU01000018.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_18, whole genome shotgun sequence (1229 bp)
Overview 1 RT 1: 1-1219 bp Neighborhood of RT #1 [1, 1227] RVT-GII Feature: gene Location: 1-141 bp Feature: gene Location: 544-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-12 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PGSU01000184.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_184, whole genome shotgun sequence (1082 bp)
Overview 1 RT 1: 3-975 bp Neighborhood of RT #1 [3, 975] RVT-GII GIIM Feature: gene Location: 3-773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-3 54 bp Feature: domain Description: GIIM Note: maturase Location: 411-639 bp Feature: domain Description: GIIM Note: maturase Location: 411-63 9 bp Feature: gene Location: 808-975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSU01000191.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_191, whole genome shotgun sequence (2083 bp)
Overview 1 RT 1: 2-1656 bp Neighborhood of RT #1 [2, 1829] RVT-GII GIIM Feature: gene Location: 2-265 bp Feature: gene Location: 546-1829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786-14 01 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1656 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 6-1656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSU01000233.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_233, whole genome shotgun sequence (34159 bp)
Overview 1 RT 1: 29879-34016 bp Neighborhood of RT #1 [29879, 34156] modC_ABC Top1 RVT-GII Feature: gene Location: 29879-30967 bp Feature: domain Description: modC_ABC Location: 29894-30959 bp Feature: domain Description: modC_ABC Location: 29894-3095 9 bp Feature: gene Location: 31056-32111 bp Feature: domain Description: Top1 Location: 31089-32103 bp Feature: domain Description: Top1 Location: 31089-32103 bp Feature: gene Location: 32942-34156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33203-34016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33203-34016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII

Seq: PGSU01000308.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_308, whole genome shotgun sequence (4712 bp)
Overview 1 RT 1: 1551-3823 bp Neighborhood of RT #1 [1551, 4575] UvrD_C RVT-UG9 Feature: gene Location: 1551-2495 bp Feature: gene Location: 2856-3446 bp Feature: domain Description: UvrD_C Location: 3180-3375 bp Feature: domain Description: UvrD_C Location: 3180-3375 bp Feature: gene Location: 3544-4575 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3550-3823 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3550-3823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: PGSU01000048.1 Pseudomonas syringae pv. actinidiae strain Fukuoka1 Fukuoka-Psa3_contig_48, whole genome shotgun sequence (4779 bp)
Overview 1 RT 1: 3-4573 bp Neighborhood of RT #1 [3, 4776] RVT-GII GIIM VgrG Feature: gene Location: 3-1187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207 -864 bp Feature: domain Description: GIIM Note: maturase Location: 942-1164 bp Feature: domain Description: GIIM Note: maturase Location: 942-1164 bp Feature: gene Location: 1873-2412 bp Feature: gene Location: 2698-4776 bp Feature: domain Description: VgrG Location: 2719-4573 bp Feature: domain Description: VgrG Location: 27 19-457 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), VgrG (COG3501)