myRT

myRT report for GCA_009903225.1_ASM990322v1

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Seq: PGSS01000012.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_12, whole genome shotgun sequence (2032 bp)
Overview 1 RT 1: 141-1539 bp Neighborhood of RT #1 [141, 1646] TnpB_IS66 RVT-GII GIIM Feature: gene Location: 141-344 bp Feature: domain Description: TnpB_IS66 Location: 165-309 bp Feature: domain Description: TnpB_IS66 Location: 1 65-309 bp Feature: gene Location: 378-1646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582-1 239 bp Feature: domain Description: GIIM Note: maturase Location: 1317-1539 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 7-1 539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: PGSS01000147.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_147, whole genome shotgun sequence (5082 bp)
Overview 1 RT 1: 1550-5019 bp Neighborhood of RT #1 [1550, 5081] UvrD_C RVT-UG9 HTH_28 Feature: gene Location: 1550-2494 bp Feature: gene Location: 2855-3445 bp Feature: domain Description: UvrD_C Location: 3179-3374 bp Feature: domain Description: UvrD_C Location: 3179-3374 bp Feature: gene Location: 3543-4574 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3549-3822 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3549-382 2 bp Feature: gene Location: 4740-5081 bp Feature: domain Description: HTH_28 Location: 4866-5019 bp Feature: domain Description: HTH_2 8 Location: 4866-5019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9, HTH_28 (pfam13518)

Seq: PGSS01000180.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_180, whole genome shotgun sequence (20146 bp)
Overview 1 RT 1: 1118-7081 bp Neighborhood of RT #1 [1118, 7089] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1118-1753 bp Feature: domain Description: DUF2625 Location: 1130-1718 bp Feature: domain Description: DUF2625 Location: 113 0-1718 bp Feature: gene Location: 1760-1951 bp Feature: gene Location: 2191-4026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2452-3265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2452-3 265 bp Feature: domain Description: Intron_maturas2 Location: 3361-3676 bp Feature: domain Description: Intron_maturas2 Location: 3 3 61-3 676 bp Feature: domain Description: HNHc Note: nucleases Location: 3799-3964 bp Feature: domain Description: HNHc Note: nucleases Location: 3 799-3 964 bp Feature: gene Location: 4857-5912 bp Feature: domain Description: Top1 Location: 4890-5904 bp Feature: domain Description: Top1 Location: 4890-5904 bp Feature: gene Location: 6001-7089 bp Feature: domain Description: modC_ABC Location: 6016-7081 bp Feature: domain Description: modC_ABC Location: 6016-7081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSS01000045.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_45, whole genome shotgun sequence (46130 bp)
Overview 1 RT 1: 3-5891 bp Neighborhood of RT #1 [3, 5891] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 3-1205 bp Feature: domain Description: COG3666 Location: 45-486 bp Feature: domain Description: COG3666 Location: 4 5-4 86 bp Feature: domain Description: DDE_Tnp_1_6 Location: 963-1185 bp Feature: domain Description: DDE_Tnp_1_6 Location: 963-1185 bp Feature: gene Location: 1456-1617 bp Feature: gene Location: 1703-3412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1856-2453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1856-24 53 bp Feature: gene Location: 3856-5274 bp Feature: domain Description: ComA-like_MBL-fold Location: 4405-4891 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 4 05-4 891 bp Feature: gene Location: 5628-5891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PGSS01000069.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_69, whole genome shotgun sequence (1813 bp)
Overview 1 RT 1: 88-1321 bp Neighborhood of RT #1 [88, 1455] RVT-GII GIIM Feature: gene Location: 88-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1036 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1321 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSS01000097.1 Pseudomonas syringae pv. actinidiae strain MAFF 212109 212109_contig_97, whole genome shotgun sequence (1869 bp)
Overview 1 RT 1: 17-1867 bp Neighborhood of RT #1 [17, 1867] RVT-GII GIIM Feature: gene Location: 17-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 0-875 bp Feature: domain Description: GIIM Note: maturase Location: 920-1130 bp Feature: domain Description: GIIM Note: maturase Location: 920-1130 bp Feature: gene Location: 1526-1867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)