myRT

myRT report for GCA_009903235.1_ASM990323v1

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Seq: PGSV01000112.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_112, whole genome shotgun sequence (22052 bp)
Overview 1 RT 1: 195-4626 bp Neighborhood of RT #1 [195, 4626] COG3666 DDE_Tnp_1_6 RVT-Retrons Feature: gene Location: 195-1418 bp Feature: domain Description: COG3666 Location: 237-678 bp Feature: domain Description: COG3666 Location: 237-678 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1155-1377 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 1 55-1 377 bp Feature: gene Location: 1669-1830 bp Feature: gene Location: 1916-3625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2069-2666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2069-2666 bp Feature: gene Location: 3750-3884 bp Feature: gene Location: 4069-4626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons

Seq: PGSV01000014.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_14, whole genome shotgun sequence (1857 bp)
Overview 1 RT 1: 85-1854 bp Neighborhood of RT #1 [85, 1854] RVT-GII GIIM Feature: gene Location: 85-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: gene Location: 1594-1854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSV01000176.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_176, whole genome shotgun sequence (4765 bp)
Overview 1 RT 1: 192-3216 bp Neighborhood of RT #1 [192, 3216] RVT-UG9 UvrD_C Feature: gene Location: 192-1223 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 198-471 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 198-471 bp Feature: gene Location: 1321-1911 bp Feature: domain Description: UvrD_C Location: 1645-1840 bp Feature: domain Description: UvrD_C Location: 1645-1840 bp Feature: gene Location: 2272-3216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PGSV01000355.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_355, whole genome shotgun sequence (10658 bp)
Overview 1 RT 1: 1194-7368 bp Neighborhood of RT #1 [1194, 7376] DUF2625 RVT-GII Intron_maturas2 HNHc RVT-GII Top1 modC_ABC Feature: gene Location: 1194-2042 bp Feature: domain Description: DUF2625 Location: 1419-2007 bp Feature: domain Description: DUF2625 Location: 14 19-2007 bp Feature: gene Location: 2049-2240 bp Feature: gene Location: 2480-3559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2618-2798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2618-2798 bp Feature: domain Description: Intron_maturas2 Location: 2894-3212 bp Feature: domain Description: Intron_maturas2 Location: 2894 -3212 bp Feature: domain Description: HNHc Note: nucleases Location: 3332-3497 bp Feature: domain Description: HNHc Note: nucleases Location: 3332-34 97 bp Feature: gene Location: 3478-4314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3739-4186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3739-4 186 bp Feature: gene Location: 5144-6199 bp Feature: domain Description: Top1 Location: 5177-6191 bp Feature: domain Description: Top1 Location: 5177-6191 bp Feature: gene Location: 6288-7376 bp Feature: domain Description: modC_ABC Location: 6303-7368 bp Feature: domain Description: modC_ABC Location: 6303-7368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSV01000068.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_68, whole genome shotgun sequence (810 bp)
Overview 1 RT 1: 3-561 bp Neighborhood of RT #1 [3, 695] RVT-GII GIIM Feature: gene Location: 3-695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-276 bp Feature: domain Description: GIIM Note: maturase Location: 333-561 bp Feature: domain Description: GIIM Note: maturase Location: 333-5 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSV01000077.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_77, whole genome shotgun sequence (877 bp)
Overview 1 RT 1: 299-875 bp Neighborhood of RT #1 [299, 874] RVT-GII Feature: gene Location: 299-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 32-875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PGSV01000095.1 Pseudomonas syringae pv. actinidiae strain Saga2-1 Saga2-1_contig_95, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 2-1696 bp Neighborhood of RT #1 [2, 1803] RVT-GII GIIM Feature: gene Location: 2-154 bp Feature: gene Location: 179-538 bp Feature: gene Location: 535-1803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 39-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1474-1696 bp Feature: domain Description: GIIM Note: maturase Location: 147 4-1696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)