myRT

myRT report for GCA_009903285.1_ASM990328v1

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Seq: PGSW01000104.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_104, whole genome shotgun sequence (2147 bp)
Overview 1 RT 1: 197-2019 bp Neighborhood of RT #1 [197, 2144] RVT-GII GIIM TnpB_IS66 Feature: gene Location: 197-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 -1 058 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1358 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 358 bp Feature: gene Location: 1872-2144 bp Feature: domain Description: TnpB_IS66 Location: 1875-2019 bp Feature: domain Description: TnpB_IS66 Location: 1 875-201 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: PGSW01000120.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_120, whole genome shotgun sequence (2018 bp)
Overview 1 RT 1: 3-2015 bp Neighborhood of RT #1 [3, 2015] RVT-GII GIIM Feature: gene Location: 3-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 46-861 bp Feature: domain Description: GIIM Note: maturase Location: 906-1116 bp Feature: domain Description: GIIM Note: maturase Location: 906-1116 bp Feature: gene Location: 1548-2015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSW01000136.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_136, whole genome shotgun sequence (36871 bp)
Overview 1 RT 1: 32979-36869 bp Neighborhood of RT #1 [32979, 36869] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 32979-34397 bp Feature: domain Description: ComA-like_MBL-fold Location: 33528-34014 bp Feature: domain Description: ComA-like_MBL-fold Location: 3 3 528-3 4014 bp Feature: gene Location: 34582-34716 bp Feature: gene Location: 34841-36550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34994-35591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 4994-3 5591 bp Feature: gene Location: 36636-36869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: PGSW01000141.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_141, whole genome shotgun sequence (1918 bp)
Overview 1 RT 1: 90-1916 bp Neighborhood of RT #1 [90, 1916] RVT-GII GIIM Feature: gene Location: 90-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 23-1038 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1323 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1323 bp Feature: gene Location: 1788-1916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSW01000220.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_220, whole genome shotgun sequence (3399 bp)
Overview 1 RT 1: 494-3334 bp Neighborhood of RT #1 [494, 3396] DUF2625 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 494-1342 bp Feature: domain Description: DUF2625 Location: 719-1307 bp Feature: domain Description: DUF2625 Location: 719-1307 bp Feature: gene Location: 1349-1540 bp Feature: gene Location: 1780-3396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1822-2635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1822-2635 bp Feature: domain Description: Intron_maturas2 Location: 2731-3049 bp Feature: domain Description: Intron_maturas2 Location: 2731-3049 bp Feature: domain Description: HNHc Note: nucleases Location: 3169-3334 bp Feature: domain Description: HNHc Note: nucleases Location: 3169-3334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PGSW01000343.1 Pseudomonas syringae pv. actinidiae strain psa142027 Psa3-142027_contig_343, whole genome shotgun sequence (1690 bp)
Overview 1 RT 1: 283-1687 bp Neighborhood of RT #1 [283, 1687] RVT-UG9 Feature: gene Location: 283-1314 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 289-562 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 289-56 2 bp Feature: gene Location: 1412-1687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9