myRT

myRT report for GCA_009903305.1_ASM990330v1

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Seq: PGSX01000102.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_102, whole genome shotgun sequence (2303 bp)
Overview 1 RT 1: 3-1825 bp Neighborhood of RT #1 [3, 1977] RVT-GII HTH_Tnp_1 HTH_Tnp_1 Tra5 Feature: gene Location: 3-278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-273 bp Feature: gene Location: 398-925 bp Feature: domain Description: HTH_Tnp_1 Location: 437-599 bp Feature: domain Description: HTH_Tnp_1 Location: 437-599 bp Feature: domain Description: HTH_Tnp_1 Location: 605-830 bp Feature: domain Description: HTH_Tnp_1 Location: 605-830 bp Feature: gene Location: 931-1977 bp Feature: domain Description: Tra5 Location: 1018-1825 bp Feature: domain Description: Tra5 Location: 1 01 8-1 825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: PGSX01000105.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_105, whole genome shotgun sequence (8570 bp)
Overview 1 RT 1: 59-4429 bp Neighborhood of RT #1 [59, 4434] RVT-GII GIIM PBP1_rhizopine_binding_like CHASE3 Tar Feature: gene Location: 59-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 63-92 0 bp Feature: domain Description: GIIM Note: maturase Location: 998-1220 bp Feature: domain Description: GIIM Note: maturase Location: 998-12 2 0 bp Feature: gene Location: 1734-2432 bp Feature: domain Description: PBP1_rhizopine_binding_like Location: 1812-2316 bp Feature: domain Description: PBP1_rhizopine_binding_like Location: 1812 -2 316 bp Feature: gene Location: 2449-4434 bp Feature: domain Description: CHASE3 Location: 2452-3001 bp Feature: domain Description: CHASE3 Location: 2 452 -3001 bp Feature: domain Description: Tar Location: 3256-4429 bp Feature: domain Description: Tar Location: 32 56-442 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP1_rhizopine_binding_like, CHASE3 (pfam05227), Tar (COG0840)

Seq: PGSX01000122.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_122, whole genome shotgun sequence (20076 bp)
Overview 1 RT 1: 1120-7083 bp Neighborhood of RT #1 [1120, 7091] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1120-1755 bp Feature: domain Description: DUF2625 Location: 1132-1720 bp Feature: domain Description: DUF2625 Location: 113 2-1720 bp Feature: gene Location: 1762-1953 bp Feature: gene Location: 2193-4028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3 267 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: Intron_maturas2 Location: 3 3 63 -3 678 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: domain Description: HNHc Note: nucleases Location: 3 801-3 966 bp Feature: gene Location: 4859-5914 bp Feature: domain Description: Top1 Location: 4892-5906 bp Feature: domain Description: Top1 Location: 4892-5906 bp Feature: gene Location: 6003-7091 bp Feature: domain Description: modC_ABC Location: 6018-7083 bp Feature: domain Description: modC_ABC Location: 6018-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSX01000150.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_150, whole genome shotgun sequence (2248 bp)
Overview 1 RT 1: 365-2194 bp Neighborhood of RT #1 [365, 2194] RVT-GII GIIM Feature: gene Location: 365-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1223 bp Feature: domain Description: GIIM Note: maturase Location: 1268-1478 bp Feature: domain Description: GIIM Note: maturase Location: 1268-14 78 bp Feature: gene Location: 1808-2194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSX01000229.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_229, whole genome shotgun sequence (5044 bp)
Overview 1 RT 1: 1550-5019 bp Neighborhood of RT #1 [1550, 5042] UvrD_C RVT-UG9 HTH_28 Feature: gene Location: 1550-2494 bp Feature: gene Location: 2855-3445 bp Feature: domain Description: UvrD_C Location: 3179-3374 bp Feature: domain Description: UvrD_C Location: 3179-3374 bp Feature: gene Location: 3543-4574 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3549-3822 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 35 49-3822 bp Feature: gene Location: 4740-5042 bp Feature: domain Description: HTH_28 Location: 4866-5019 bp Feature: domain Description: HTH_28 Location: 4866-5 019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9, HTH_28 (pfam13518)

Seq: PGSX01000056.1 Pseudomonas syringae pv. actinidiae strain MAFF 212104 212104_contig_56, whole genome shotgun sequence (16268 bp)
Overview 1 RT 1: 3-3510 bp Neighborhood of RT #1 [3, 3893] RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 3-236 bp Feature: gene Location: 322-2031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 475-1072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 475-1072 bp Feature: gene Location: 2156-2290 bp Feature: gene Location: 2475-3893 bp Feature: domain Description: ComA-like_MBL-fold Location: 3024-3510 bp Feature: domain Description: ComA-like_MBL-fold Location: 3024-3510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731)