myRT

myRT report for GCA_009903325.1_ASM990332v1

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Seq: PGSZ01000137.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_137, whole genome shotgun sequence (4712 bp)
Overview 1 RT 1: 1551-3823 bp Neighborhood of RT #1 [1551, 4575] UvrD_C RVT-UG9 Feature: gene Location: 1551-2495 bp Feature: gene Location: 2856-3446 bp Feature: domain Description: UvrD_C Location: 3180-3375 bp Feature: domain Description: UvrD_C Location: 31 80-3375 bp Feature: gene Location: 3544-4575 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3550-3823 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3550-3823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: PGSZ01000235.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_235, whole genome shotgun sequence (20134 bp)
Overview 1 RT 1: 1120-7082 bp Neighborhood of RT #1 [1120, 7090] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1120-1755 bp Feature: domain Description: DUF2625 Location: 1132-1720 bp Feature: domain Description: DUF2 62 5 Location: 1132 -172 0 bp Feature: gene Location: 1762-1953 bp Feature: gene Location: 2193-4028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 454-32 67 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: gene Location: 4858-5913 bp Feature: domain Description: Top1 Location: 4891-5905 bp Feature: domain Description: Top1 Location: 4891-5905 bp Feature: gene Location: 6002-7090 bp Feature: domain Description: modC_ABC Location: 6017-7082 bp Feature: domain Description: modC_ABC Location: 6017-7082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PGSZ01000045.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_45, whole genome shotgun sequence (46132 bp)
Overview 1 RT 1: 40859-46110 bp Neighborhood of RT #1 [40859, 46130] ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 40859-42277 bp Feature: domain Description: ComA-like_MBL-fold Location: 41408-41894 bp Feature: domain Description: ComA-like_MBL-fold Location: 41408-41894 bp Feature: gene Location: 42462-42596 bp Feature: gene Location: 42721-44430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42874-43471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42874-43 471 bp Feature: gene Location: 44516-44677 bp Feature: gene Location: 44928-46130 bp Feature: domain Description: COG3666 Location: 44970-45411 bp Feature: domain Description: COG3 666 Location: 44970-45411 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45888-46110 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45888-46110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: PGSZ01000051.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_51, whole genome shotgun sequence (1578 bp)
Overview 1 RT 1: 29-1577 bp Neighborhood of RT #1 [29, 1577] RVT-GII GIIM Feature: gene Location: 29-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233-890 bp Feature: domain Description: GIIM Note: maturase Location: 968-1190 bp Feature: domain Description: GIIM Note: maturase Location: 968-1190 bp Feature: gene Location: 1371-1577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSZ01000058.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_58, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 2-1753 bp Neighborhood of RT #1 [2, 1753] RVT-GII GIIM Feature: gene Location: 2-1255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245 -860 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: domain Description: GIIM Note: maturase Location: 905 -1115 bp Feature: gene Location: 1478-1753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGSZ01000096.1 Pseudomonas syringae pv. actinidiae strain 1404 1404Shizuoka-Psa3_contig_96, whole genome shotgun sequence (2155 bp)
Overview 1 RT 1: 2-2153 bp Neighborhood of RT #1 [2, 2153] RVT-GII GIIM Feature: gene Location: 2-160 bp Feature: gene Location: 584-1951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1532 bp Feature: domain Description: GIIM Note: maturase Location: 1589-1817 bp Feature: domain Description: GIIM Note: maturase Location: 1589-1817 bp Feature: gene Location: 1986-2153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)