myRT

myRT report for GCA_009903585.1_ASM990358v1

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Seq: QXHC01000051.1 Escherichia coli strain E825 NODE_51_length_22165_cov_484.922, whole genome shotgun sequence (22165 bp)
Overview 1 RT 1: 4479-8361 bp Neighborhood of RT #1 [4479, 8366] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 4479-5195 bp Feature: domain Description: rph Location: 4482-5190 bp Feature: domain Description: rph Location: 4482-51 90 bp Feature: gene Location: 5246-5902 bp Feature: domain Description: pyrE Location: 5264-5897 bp Feature: domain Description: pyrE Location: 5264-5897 bp Feature: gene Location: 6200-7159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6335-6884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6335-6884 bp Feature: gene Location: 7205-7801 bp Feature: domain Description: slmA Location: 7211-7787 bp Feature: domain Description: slmA Location: 721 1 -7787 bp Feature: gene Location: 7908-8366 bp Feature: domain Description: dut Location: 7914-8361 bp Feature: domain Description: dut Location: 791 4-8361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXHC01000059.1 Escherichia coli strain E825 NODE_59_length_14905_cov_727.147, whole genome shotgun sequence (14905 bp)
Overview 1 RT 1: 98-1882 bp Neighborhood of RT #1 [98, 1882] RVT-GII GIIM HNHc Feature: gene Location: 98-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-692 bp Feature: domain Description: GIIM Note: maturase Location: 743-977 bp Feature: domain Description: GIIM Note: maturase Location: 743-977 bp Feature: domain Description: HNHc Note: nucleases Location: 1208-1358 bp Feature: domain Description: HNHc Note: nucleases Location: 12 08-1358 bp Feature: gene Location: 1497-1703 bp Feature: gene Location: 1730-1882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)