myRT

myRT report for GCA_009903595.1_ASM990359v1

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Seq: QXHB01000120.1 Escherichia coli strain E15 NODE_120_length_2660_cov_1.55246, whole genome shotgun sequence (2660 bp)
Overview 1 RT 1: 106-2541 bp Neighborhood of RT #1 [106, 2657] RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_POL_like RVT-UNC Feature: gene Location: 106-2295 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 322-661 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 322-661 bp Feature: domain Description: Integrase_H2C2 Location: 958-1123 bp Feature: domain Description: Integrase_H2C2 Location: 958-1 1 23 bp Feature: domain Description: rve Location: 1183-1516 bp Feature: domain Description: rve Location: 1 1 83-1 51 6 bp Feature: domain Description: CD_POL_like Location: 2086-2224 bp Feature: domain Description: CD_POL_like Location: 2086-2224 bp Feature: gene Location: 2283-2657 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2424-2541 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2424-2541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_POL_like (cd18979), RVT-UG26/RVT-UG19/RVT-UG21/RVT-DGRs(RVT-UNC)

Seq: QXHB01000125.1 Escherichia coli strain E15 NODE_125_length_2508_cov_388.666, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 2-2180 bp Neighborhood of RT #1 [2, 2425] PHA02517 RVT-GII GIIM Feature: gene Location: 2-310 bp Feature: domain Description: PHA02517 Location: 5-245 bp Feature: domain Description: PHA02 517 Location: 5-2 45 bp Feature: gene Location: 902-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1907 bp Feature: domain Description: GIIM Note: maturase Location: 1982-2180 bp Feature: domain Description: GIIM Note: maturase Location: 1982 -2 180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QXHB01000002.1 Escherichia coli strain E15 NODE_2_length_270437_cov_404.725, whole genome shotgun sequence (270437 bp)
Overview 1 RT 1: 262123-265441 bp Neighborhood of RT #1 [262123, 265653] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 262123-262263 bp Feature: gene Location: 262276-262827 bp Feature: domain Description: SLATT_5 Location: 262282-262798 bp Feature: domain Description: SLATT_5 Location: 262282-262798 bp Feature: gene Location: 262805-264175 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 263033-263639 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 263 03 3 -263 63 9 bp Feature: gene Location: 264283-264576 bp Feature: gene Location: 264613-265653 bp Feature: domain Description: Peptidase_S74 Location: 265294-265441 bp Feature: domain Description: Peptidase_S74 Location: 265294-265441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: QXHB01000038.1 Escherichia coli strain E15 NODE_38_length_42823_cov_393.115, whole genome shotgun sequence (42823 bp)
Overview 1 RT 1: 39320-42207 bp Neighborhood of RT #1 [39320, 42233] Antirestrict DUF932 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 39320-39805 bp Feature: domain Description: Antirestrict Location: 39518-39803 bp Feature: domain Description: Antirestrict Location: 39518-39803 bp Feature: gene Location: 39896-40282 bp Feature: domain Description: DUF932 Location: 39902-40247 bp Feature: domain Description: DUF932 Location: 39902-4 024 7 bp Feature: gene Location: 40455-42233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40716-41511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0716-4 1511 bp Feature: domain Description: Intron_maturas2 Location: 41637-41862 bp Feature: domain Description: Intron_maturas2 Location: 4 1637-4 1862 bp Feature: domain Description: HNHc Note: nucleases Location: 42057-42207 bp Feature: domain Description: HNHc Note: nucleases Location: 4 2057-4 2207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)