myRT

myRT report for GCA_009903715.2_ASM990371v2

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Seq: WYDM02000001.1 Escherichia fergusonii strain A12 A12_chr_1, whole genome shotgun sequence (2036286 bp)
Overview 1 RT 1: 725185-728943 bp 2 RT 2: 1422054-1425934 bp Neighborhood of RT #1 [725185, 728943] SspB sspA RVT_N RVT-GII YkfC HNHc Neighborhood of RT #2 [1422054, 1425939] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 725185-725688 bp Feature: domain Description: SspB Location: 725194-725686 bp Feature: domain Description: SspB Location: 7251 94-725686 bp Feature: gene Location: 725694-726332 bp Feature: domain Description: sspA Location: 725697-726327 bp Feature: domain Description: sspA Location: 725697-726327 bp Feature: gene Location: 726721-728454 bp Feature: RT Description: RVT_N Location: 726799-727042 bp Feature: RT Description: RVT_N Location: 726799-727042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727087-727729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727087-727729 bp Feature: domain Description: YkfC Location: 727855-728047 bp Feature: domain Description: YkfC Location: 727855-728047 bp Feature: domain Description: HNHc Note: nucleases Location: 728242-728398 bp Feature: domain Description: HNHc Note: nucleases Location: 728242-728398 bp Feature: gene Location: 728500-728628 bp Feature: gene Location: 728686-728943 bp Feature: gene Location: 1422054-1422770 bp Feature: domain Description: rph Location: 1422057-1422765 bp Feature: domain Description: rph Location: 1 422057-1 422765 bp Feature: gene Location: 1422821-1423477 bp Feature: domain Description: pyrE Location: 1422839-1423472 bp Feature: domain Description: pyrE Location: 1 422839-1 423472 bp Feature: gene Location: 1423775-1424734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1423910-1424459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 42391 0-1 424459 bp Feature: gene Location: 1424778-1425374 bp Feature: domain Description: slmA Location: 1424784-1425360 bp Feature: domain Description: slmA Location: 1 424784-1 425360 bp Feature: gene Location: 1425481-1425939 bp Feature: domain Description: dut Location: 1425487-1425934 bp Feature: domain Description: dut Location: 1 425487-1 425934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SspB (pfam04386), sspA (PRK09481), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480)
dut (TIGR00576)

Seq: WYDM02000004.1 Escherichia fergusonii strain A12 A12_chr_4, whole genome shotgun sequence (519841 bp)
Overview 1 RT 1: 50395-52954 bp Neighborhood of RT #1 [50395, 53001] GIIM RVT-GII RVT-GII RVT-GII PHA02517 Feature: gene Location: 50395-50613 bp Feature: gene Location: 50678-50848 bp Feature: domain Description: GIIM Note: maturase Location: 50684-50819 bp Feature: domain Description: GIIM Note: maturase Location: 50684-50819 bp Feature: gene Location: 50909-51157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50915-51086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50915-51086 bp Feature: gene Location: 51173-51448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51176-51368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51176-51368 bp Feature: gene Location: 51499-51984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51772-51955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51772 -51955 bp Feature: gene Location: 52105-52311 bp Feature: gene Location: 52594-53001 bp Feature: domain Description: PHA02517 Location: 52618-52954 bp Feature: domain Description: PHA02 517 Location: 52 618-52 954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)