myRT

myRT report for GCA_009904695.1_ASM990469v1

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Seq: WXWQ01000253.1 Vibrio sp. V40_P2S30T141 scaffold225_size7476, whole genome shotgun sequence (7542 bp)
Overview 1 RT 1: 2352-5717 bp Neighborhood of RT #1 [2352, 5770] RVT_N RVT-GII IstB_IS21 IstB_IS21_ATP IstB_IS21 Feature: gene Location: 2352-2777 bp Feature: gene Location: 2917-3099 bp Feature: gene Location: 3894-4694 bp Feature: domain Description: RVT_N Location: 3942-4185 bp Feature: domain Description: RVT_N Location: 3942-41 85 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4230-4665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4230-4665 bp Feature: gene Location: 4759-4998 bp Feature: domain Description: IstB_IS21 Location: 4819-4945 bp Feature: domain Description: IstB_IS21 Location: 481 9-4945 bp Feature: gene Location: 5030-5770 bp Feature: domain Description: IstB_IS21_ATP Location: 5099-5180 bp Feature: domain Description: IstB_IS21 _ATP Location: 5099-51 80 bp Feature: domain Description: IstB_IS21 Location: 5192-5717 bp Feature: domain Description: IstB_IS21 Location: 51 92-571 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, IstB_IS21 (pfam01695), IstB_IS21_ATP (pfam08483)

Seq: WXWQ01000283.1 Vibrio sp. V40_P2S30T141 scaffold249_size3941, whole genome shotgun sequence (3941 bp)
Overview 1 RT 1: 1155-3169 bp Neighborhood of RT #1 [1155, 3393] RVT_N RVT-GII GIIM Feature: gene Location: 1155-1304 bp Feature: gene Location: 1549-1680 bp Feature: gene Location: 1879-3393 bp Feature: domain Description: RVT_N Location: 1969-2212 bp Feature: domain Description: RVT_N Location: 1969-2 2 12 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257-2884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 57-2 884 bp Feature: domain Description: GIIM Note: maturase Location: 2941-3169 bp Feature: domain Description: GIIM Note: maturase Location: 2 941-3169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WXWQ01000043.1 Vibrio sp. V40_P2S30T141 scaffold293_size2778, whole genome shotgun sequence (2778 bp)
Overview 1 RT 1: 3-2728 bp Neighborhood of RT #1 [3, 2775] RVT-UG17 SLATT_5 SIR2-like Feature: gene Location: 3-1187 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 231-834 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23 1-83 4 bp Feature: gene Location: 1189-1842 bp Feature: domain Description: SLATT_5 Location: 1198-1786 bp Feature: domain Description: SLATT_5 Location: 1198-1786 bp Feature: gene Location: 2338-2775 bp Feature: domain Description: SIR2-like Location: 2380-2728 bp Feature: domain Description: SIR2-like Location: 23 80-2728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), SIR2-like (cd01406)

Seq: WXWQ01000140.1 Vibrio sp. V40_P2S30T141 scaffold9_size32502, whole genome shotgun sequence (32502 bp)
Overview 1 RT 1: 128-5204 bp Neighborhood of RT #1 [128, 5215] SapB RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 128-598 bp Feature: domain Description: SapB Location: 182-569 bp Feature: domain Description: SapB Location: 182-569 bp Feature: gene Location: 815-2488 bp Feature: domain Description: RVT_N Location: 866-1109 bp Feature: domain Description: RVT_N Location: 866-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154 -1799 bp Feature: domain Description: GIIM Note: maturase Location: 1853-2084 bp Feature: domain Description: GIIM Note: maturase Location: 1853-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2300-2462 bp Feature: domain Description: HNHc Note: nucleases Location: 2300-24 62 bp Feature: gene Location: 3133-3327 bp Feature: gene Location: 3578-5215 bp Feature: domain Description: groEL Location: 3584-5204 bp Feature: domain Description: groEL Location: 3584 -5204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SapB (smart00741), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)