myRT

myRT report for GCA_009904795.1_ASM990479v1

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Seq: WXWL01000091.1 Vibrio sp. V34_P3A8T189 scaffold129_size4296, whole genome shotgun sequence (4296 bp)
Overview 1 RT 1: 319-4025 bp Neighborhood of RT #1 [319, 4294] RVT-UG17 SLATT_5 SIR2_2 AAA Feature: gene Location: 319-1650 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 547-1150 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 547-1 1 50 bp Feature: gene Location: 1652-2305 bp Feature: domain Description: SLATT_5 Location: 1661-2249 bp Feature: domain Description: SLATT_5 Location: 1 661 -2249 bp Feature: gene Location: 2801-4294 bp Feature: domain Description: SIR2_2 Location: 3110-3545 bp Feature: domain Description: SIR2_2 Location: 31 1 0-3545 bp Feature: domain Description: AAA Location: 3890-4025 bp Feature: domain Description: AAA Location: 3890-4025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), SIR2_2 (pfam13289), AAA (TIGR00769)

Seq: WXWL01000150.1 Vibrio sp. V34_P3A8T189 scaffold1_size152209, whole genome shotgun sequence (152209 bp)
Overview 1 RT 1: 142961-149240 bp Neighborhood of RT #1 [142961, 149251] EFP_modif_epmB SapB RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 142961-143983 bp Feature: domain Description: EFP_modif_epmB Location: 143009-143966 bp Feature: domain Description: EFP_modif_epmB Location: 143009-143966 bp Feature: gene Location: 144164-144634 bp Feature: domain Description: SapB Location: 144218-144605 bp Feature: domain Description: SapB Location: 1442 18-144605 bp Feature: gene Location: 144851-146524 bp Feature: domain Description: RVT_N Location: 144902-145145 bp Feature: domain Description: RVT_N Location: 144902 -145145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145190-145835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145190-145835 bp Feature: domain Description: GIIM Note: maturase Location: 145889-146120 bp Feature: domain Description: GIIM Note: maturase Location: 145889-14612 0 bp Feature: domain Description: HNHc Note: nucleases Location: 146336-146498 bp Feature: domain Description: HNHc Note: nucleases Location: 146336-146498 bp Feature: gene Location: 147169-147363 bp Feature: gene Location: 147614-149251 bp Feature: domain Description: groEL Location: 147620-149240 bp Feature: domain Description: groEL Location: 14762 0-1492 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFP_modif_epmB (TIGR03821), SapB (smart00741), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: WXWL01000112.1 Vibrio sp. V34_P3A8T189 scaffold72_size24765, whole genome shotgun sequence (24740 bp)
Overview 1 RT 1: 14878-24093 bp Neighborhood of RT #1 [14878, 24093] PRK10216 PRK10473 RVT_N RVT-GII GIIM COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT_N RVT-GII Feature: gene Location: 14878-15834 bp Feature: domain Description: PRK10216 Location: 14881-15826 bp Feature: domain Description: PRK10216 Location: 14881-15826 bp Feature: gene Location: 15809-17062 bp Feature: domain Description: PRK10473 Location: 15878-17051 bp Feature: domain Description: PRK10473 Location: 15878-17051 bp Feature: gene Location: 17383-18861 bp Feature: domain Description: RVT_N Location: 17437-17680 bp Feature: domain Description: RVT_N Location: 1743 7-17680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17725-18352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17725-183 52 bp Feature: domain Description: GIIM Note: maturase Location: 18415-18637 bp Feature: domain Description: GIIM Note: maturase Location: 18415-1863 7 bp Feature: gene Location: 18868-19278 bp Feature: gene Location: 19403-20935 bp Feature: domain Description: COG4584 Location: 19550-20306 bp Feature: domain Description: COG4584 Location: 19550-203 06 bp Feature: domain Description: COG4584 Location: 20372-20828 bp Feature: domain Description: COG4584 Location: 203 72-20828 bp Feature: gene Location: 20946-21686 bp Feature: domain Description: IstB_IS21_ATP Location: 21015-21096 bp Feature: domain Description: IstB_IS21_ATP Location: 21015-21096 bp Feature: domain Description: IstB_IS21 Location: 21108-21633 bp Feature: domain Description: IstB_IS21 Location: 21108-2163 3 bp Feature: gene Location: 21751-22551 bp Feature: domain Description: RVT_N Location: 21799-22042 bp Feature: domain Description: RVT_N Location: 21799-22042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22087-22522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22087-22522 bp Feature: gene Location: 23346-23528 bp Feature: gene Location: 23668-24093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695)

Seq: WXWL01000099.1 Vibrio sp. V34_P3A8T189 scaffold88_size13728, whole genome shotgun sequence (13728 bp)
Overview 1 RT 1: 1-3146 bp Neighborhood of RT #1 [1, 3146] RVT_N RVT-GII GIIM Feature: gene Location: 1-291 bp Feature: gene Location: 275-460 bp Feature: gene Location: 908-2422 bp Feature: domain Description: RVT_N Location: 998-1241 bp Feature: domain Description: RVT_N Location: 998-124 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1913 bp Feature: domain Description: GIIM Note: maturase Location: 1970-2198 bp Feature: domain Description: GIIM Note: maturase Location: 1970-2198 bp Feature: gene Location: 2559-2732 bp Feature: gene Location: 2997-3146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)