myRT

myRT report for GCA_009904895.1_ASM990489v1

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Seq: WXWI01000009.1 Vibrio sp. V31_P5A7T61 scaffold18_size70093, whole genome shotgun sequence (70093 bp)
Overview 1 RT 1: 45278-49677 bp Neighborhood of RT #1 [45278, 49677] RVT_N RVT-GII GIIM Feature: gene Location: 45278-45427 bp Feature: gene Location: 45672-45803 bp Feature: gene Location: 46002-47516 bp Feature: domain Description: RVT_N Location: 46092-46335 bp Feature: domain Description: RVT_N Location: 46092-46335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46380-47007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46380-47007 bp Feature: domain Description: GIIM Note: maturase Location: 47064-47292 bp Feature: domain Description: GIIM Note: maturase Location: 47064-47292 bp Feature: gene Location: 47964-48149 bp Feature: gene Location: 48133-49677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WXWI01000037.1 Vibrio sp. V31_P5A7T61 scaffold45_size22770, whole genome shotgun sequence (22840 bp)
Overview 1 RT 1: 5817-14947 bp Neighborhood of RT #1 [5817, 14947] DUF4231 RVT-GII GIIM COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT_N RVT-GII Feature: gene Location: 5817-8246 bp Feature: gene Location: 8263-8700 bp Feature: domain Description: DUF4231 Location: 8293-8587 bp Feature: domain Description: DUF42 31 Location: 82 93-8587 bp Feature: gene Location: 9081-9803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9099-9294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9099-92 94 bp Feature: domain Description: GIIM Note: maturase Location: 9354-9579 bp Feature: domain Description: GIIM Note: maturase Location: 9354-9579 bp Feature: gene Location: 10257-11789 bp Feature: domain Description: COG4584 Location: 10404-11160 bp Feature: domain Description: COG4584 Location: 10404-11160 bp Feature: domain Description: COG4584 Location: 11226-11682 bp Feature: domain Description: COG4584 Location: 112 2 6-11682 bp Feature: gene Location: 11800-12540 bp Feature: domain Description: IstB_IS21_ATP Location: 11869-11950 bp Feature: domain Description: IstB_IS2 1_ATP Location: 11869-11950 bp Feature: domain Description: IstB_IS21 Location: 11962-12487 bp Feature: domain Description: IstB_IS2 1 Location: 11962 -12 487 bp Feature: gene Location: 12605-13405 bp Feature: domain Description: RVT_N Location: 12653-12896 bp Feature: domain Description: RVT_N Location: 12 653-12 896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12941-13376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 941-13376 bp Feature: gene Location: 14200-14382 bp Feature: gene Location: 14522-14947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4231 (pfam14015), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT_N (pfam13655)

Seq: WXWI01000057.1 Vibrio sp. V31_P5A7T61 scaffold4_size190821, whole genome shotgun sequence (190821 bp)
Overview 1 RT 1: 41571-47844 bp Neighborhood of RT #1 [41571, 47861] groEL RVT_N RVT-GII GIIM HNHc SapB EFP_modif_epmB Feature: gene Location: 41571-43208 bp Feature: domain Description: groEL Location: 41577-43197 bp Feature: domain Description: groEL Location: 41577-43 197 bp Feature: gene Location: 43891-44025 bp Feature: gene Location: 44298-45971 bp Feature: domain Description: RVT_N Location: 44349-44592 bp Feature: domain Description: RVT_N Location: 443 49-44592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44637-45282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4463 7-45282 bp Feature: domain Description: GIIM Note: maturase Location: 45336-45567 bp Feature: domain Description: GIIM Note: maturase Location: 453 3 6-45567 bp Feature: domain Description: HNHc Note: nucleases Location: 45783-45945 bp Feature: domain Description: HNHc Note: nucleases Location: 45783 -45945 bp Feature: gene Location: 46188-46658 bp Feature: domain Description: SapB Location: 46242-46629 bp Feature: domain Description: SapB Location: 46242-46629 bp Feature: gene Location: 46839-47861 bp Feature: domain Description: EFP_modif_epmB Location: 46887-47844 bp Feature: domain Description: EFP_modif_epmB Location: 46887-47844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SapB (smart00741), EFP_modif_epmB (TIGR03821)

Seq: WXWI01000026.1 Vibrio sp. V31_P5A7T61 scaffold52_size6369, whole genome shotgun sequence (6369 bp)
Overview 1 RT 1: 1-4467 bp Neighborhood of RT #1 [1, 6368] PHA02517 InsE RVT-UG17 SLATT_5 SIR2_2 Feature: gene Location: 1-531 bp Feature: domain Description: PHA02517 Location: 7-532 bp Feature: domain Description: PHA02517 Location: 7-532 bp Feature: gene Location: 663-971 bp Feature: domain Description: InsE Location: 666-960 bp Feature: domain Description: InsE Location: 666-960 bp Feature: gene Location: 1241-2572 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1469-2072 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 14 69-2072 bp Feature: gene Location: 2574-3227 bp Feature: domain Description: SLATT_5 Location: 2583-3171 bp Feature: domain Description: SLATT_5 Location: 2583-3171 bp Feature: gene Location: 3723-6368 bp Feature: domain Description: SIR2_2 Location: 4032-4467 bp Feature: domain Description: SIR2_2 Location: 4 032-4 4 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-UG17, SLATT_5 (pfam18160), SIR2_2 (pfam13289)

Seq: WXWI01000073.1 Vibrio sp. V31_P5A7T61 scaffold9_size132001, whole genome shotgun sequence (132071 bp)
Overview 1 RT 1: 3384-8225 bp Neighborhood of RT #1 [3384, 8233] RVT_N RVT-GII GIIM PRK10473 PRK10216 Feature: gene Location: 3384-3557 bp Feature: gene Location: 3869-4243 bp Feature: gene Location: 4250-5728 bp Feature: domain Description: RVT_N Location: 4304-4547 bp Feature: domain Description: RVT_N Location: 4304-45 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4592-5219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 92-5 219 bp Feature: domain Description: GIIM Note: maturase Location: 5282-5504 bp Feature: domain Description: GIIM Note: maturase Location: 5 282-5 5 04 bp Feature: gene Location: 6049-7302 bp Feature: domain Description: PRK10473 Location: 6118-7291 bp Feature: domain Description: PRK10473 Location: 6118-7291 bp Feature: gene Location: 7277-8233 bp Feature: domain Description: PRK10216 Location: 7280-8225 bp Feature: domain Description: PRK10216 Location: 7280-8225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)