myRT

myRT report for GCA_009904945.1_ASM990494v1

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Seq: WXWJ01000046.1 Vibrio sp. V32_P6A28T40 scaffold34_size34909, whole genome shotgun sequence (34909 bp)
Overview 1 RT 1: 9858-14257 bp Neighborhood of RT #1 [9858, 14257] RVT_N RVT-GII GIIM Feature: gene Location: 9858-10007 bp Feature: gene Location: 10252-10383 bp Feature: gene Location: 10582-12096 bp Feature: domain Description: RVT_N Location: 10672-10915 bp Feature: domain Description: RVT_N Location: 1 0672-1 091 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10960-11587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0960-1 1 587 bp Feature: domain Description: GIIM Note: maturase Location: 11644-11872 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 644-1 1 872 bp Feature: gene Location: 12544-12729 bp Feature: gene Location: 12713-14257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WXWJ01000063.1 Vibrio sp. V32_P6A28T40 scaffold43_size21637, whole genome shotgun sequence (21637 bp)
Overview 1 RT 1: 15690-20788 bp Neighborhood of RT #1 [15690, 21288] SIR2_2 TPR SLATT_5 RVT-UG17 Feature: gene Location: 15690-18806 bp Feature: domain Description: SIR2_2 Location: 15999-16434 bp Feature: domain Description: SIR2 _2 Location: 15999-16434 bp Feature: domain Description: TPR Location: 18183-18396 bp Feature: domain Description: TPR Location: 18183-18396 bp Feature: gene Location: 19302-19955 bp Feature: domain Description: SLATT_5 Location: 19311-19899 bp Feature: domain Description: SLATT_5 Location: 19311-19899 bp Feature: gene Location: 19957-21288 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 20185-20788 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 0185-2 0788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), TPR (smart00028), SLATT_5 (pfam18160), RVT-UG17

Seq: WXWJ01000035.1 Vibrio sp. V32_P6A28T40 scaffold45_size19090, whole genome shotgun sequence (19090 bp)
Overview 1 RT 1: 14796-19088 bp Neighborhood of RT #1 [14796, 19088] PRK10216 PRK10473 RVT_N RVT-GII GIIM Feature: gene Location: 14796-15752 bp Feature: domain Description: PRK10216 Location: 14799-15744 bp Feature: domain Description: PRK10216 Location: 14799-15744 bp Feature: gene Location: 15727-16980 bp Feature: domain Description: PRK10473 Location: 15796-16969 bp Feature: domain Description: PRK10473 Location: 15796-16969 bp Feature: gene Location: 17301-18779 bp Feature: domain Description: RVT_N Location: 17355-17598 bp Feature: domain Description: RVT_N Location: 173 55-17598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17643-18270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17643 -18270 bp Feature: domain Description: GIIM Note: maturase Location: 18333-18555 bp Feature: domain Description: GIIM Note: maturase Location: 183 3 3 -18555 bp Feature: gene Location: 18786-19088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WXWJ01000030.1 Vibrio sp. V32_P6A28T40 scaffold4_size184638, whole genome shotgun sequence (184565 bp)
Overview 1 RT 1: 142961-149240 bp Neighborhood of RT #1 [142961, 149251] EFP_modif_epmB SapB RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 142961-143983 bp Feature: domain Description: EFP_modif_epmB Location: 143009-143966 bp Feature: domain Description: EFP_modif_epmB Location: 14 3009-14 3966 bp Feature: gene Location: 144164-144634 bp Feature: domain Description: SapB Location: 144218-144605 bp Feature: domain Description: SapB Location: 14 4 218-14 4 605 bp Feature: gene Location: 144851-146524 bp Feature: domain Description: RVT_N Location: 144902-145145 bp Feature: domain Description: RVT_N Location: 14 4 902-14 514 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145190-145835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 5190-14 5835 bp Feature: domain Description: GIIM Note: maturase Location: 145889-146120 bp Feature: domain Description: GIIM Note: maturase Location: 14 5889-14 6120 bp Feature: domain Description: HNHc Note: nucleases Location: 146336-146498 bp Feature: domain Description: HNHc Note: nucleases Location: 14 6336-14 64 98 bp Feature: gene Location: 147169-147363 bp Feature: gene Location: 147614-149251 bp Feature: domain Description: groEL Location: 147620-149240 bp Feature: domain Description: groEL Location: 14 7620-14 924 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFP_modif_epmB (TIGR03821), SapB (smart00741), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: WXWJ01000021.1 Vibrio sp. V32_P6A28T40 scaffold53_size23340, whole genome shotgun sequence (23402 bp)
Overview 1 RT 1: 9555-18098 bp Neighborhood of RT #1 [9555, 18098] RVT_N RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 COG4584 RVT-GII GIIM DUF4231 Feature: gene Location: 9555-9737 bp Feature: gene Location: 9796-9936 bp Feature: gene Location: 10532-11332 bp Feature: domain Description: RVT_N Location: 10580-10823 bp Feature: domain Description: RVT_N Location: 105 80-10823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10868-11303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10868-11303 bp Feature: gene Location: 11397-12137 bp Feature: domain Description: IstB_IS21_ATP Location: 11466-11547 bp Feature: domain Description: IstB_IS21_ATP Location: 11466-115 47 bp Feature: domain Description: IstB_IS21 Location: 11559-12084 bp Feature: domain Description: IstB_IS21 Location: 115 5 9-12084 bp Feature: gene Location: 12148-13680 bp Feature: domain Description: COG4584 Location: 12295-13051 bp Feature: domain Description: COG45 84 Location: 12295 -1305 1 bp Feature: domain Description: COG4584 Location: 13117-13573 bp Feature: domain Description: COG45 84 Location: 13117-135 73 bp Feature: gene Location: 14115-14837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14133-14328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14133-14328 bp Feature: domain Description: GIIM Note: maturase Location: 14388-14613 bp Feature: domain Description: GIIM Note: maturase Location: 14388-14613 bp Feature: gene Location: 15218-15655 bp Feature: domain Description: DUF4231 Location: 15248-15542 bp Feature: domain Description: DUF4231 Location: 15 248-15 5 42 bp Feature: gene Location: 15672-18098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), GIIM (pfam08388), DUF4231 (pfam14015)