myRT

myRT report for GCA_009906175.1_ASM990617v1

Download annotations/find similar RTs

Seq: JAAALS010000118.1 Vibrio toranzoniae strain cmj 9.11 NODE_118_length_1929_cov_348.316870, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 2-1827 bp Neighborhood of RT #1 [2, 1928] RVT-GII GIIM Feature: gene Location: 2-151 bp Feature: gene Location: 329-484 bp Feature: gene Location: 723-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1 557 bp Feature: domain Description: GIIM Note: maturase Location: 1605-1827 bp Feature: domain Description: GIIM Note: maturase Location: 1 605-1 827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAALS010000127.1 Vibrio toranzoniae strain cmj 9.11 NODE_127_length_1537_cov_213.170213, whole genome shotgun sequence (1537 bp)
Overview 1 RT 1: 98-1373 bp Neighborhood of RT #1 [98, 1459] RVT-GII GIIM Feature: gene Location: 98-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1070 bp Feature: domain Description: GIIM Note: maturase Location: 1154-1373 bp Feature: domain Description: GIIM Note: maturase Location: 1154-1373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAALS010000031.1 Vibrio toranzoniae strain cmj 9.11 NODE_31_length_50995_cov_51.494908, whole genome shotgun sequence (50995 bp)
Overview 1 RT 1: 29788-32511 bp Neighborhood of RT #1 [29788, 32511] Phage_AlpA RVT-UG2 Feature: gene Location: 29788-30057 bp Feature: domain Description: Phage_AlpA Location: 29818-29962 bp Feature: domain Description: Phage_AlpA Location: 29818-29962 bp Feature: gene Location: 30166-30366 bp Feature: gene Location: 30496-31926 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 30799-31627 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 0799-3 1627 bp Feature: gene Location: 31956-32117 bp Feature: gene Location: 32377-32511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_AlpA (pfam05930), RVT-UG2

Seq: JAAALS010000042.1 Vibrio toranzoniae strain cmj 9.11 NODE_42_length_33583_cov_52.043341, whole genome shotgun sequence (33583 bp)
Overview 1 RT 1: 10671-16288 bp Neighborhood of RT #1 [10671, 16332] PRK01103 UDP_GE_SDE_e RVT-GII GIIM coaD RfaF Feature: gene Location: 10671-11480 bp Feature: domain Description: PRK01103 Location: 10674-11475 bp Feature: domain Description: PRK01103 Location: 10674 -114 75 bp Feature: gene Location: 11572-12576 bp Feature: domain Description: UDP_GE_SDE_e Location: 11575-12565 bp Feature: domain Description: UDP_GE_SDE_e Location: 11575-12565 bp Feature: gene Location: 13369-14652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13582-14203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13582-14 203 bp Feature: domain Description: GIIM Note: maturase Location: 14248-14467 bp Feature: domain Description: GIIM Note: maturase Location: 14 24 8-14 4 67 bp Feature: gene Location: 14739-15221 bp Feature: domain Description: coaD Location: 14748-15213 bp Feature: domain Description: coaD Location: 14 74 8-15213 bp Feature: gene Location: 15223-16332 bp Feature: domain Description: RfaF Location: 15277-16288 bp Feature: domain Description: RfaF Location: 15277-16288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01103 (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase), UDP_GE_SDE_e (cd05253), RVT-GII, GIIM (pfam08388), coaD (PRK13964), RfaF (COG0859)

Seq: JAAALS010000047.1 Vibrio toranzoniae strain cmj 9.11 NODE_47_length_28472_cov_53.099877, whole genome shotgun sequence (28472 bp)
Overview 1 RT 1: 2-2720 bp 2 RT 2: 5799-9816 bp Neighborhood of RT #1 [2, 2720] RVT_N RVT-GII GIIM Neighborhood of RT #2 [5799, 9816] COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 2-160 bp Feature: gene Location: 237-425 bp Feature: gene Location: 444-2075 bp Feature: domain Description: RVT_N Location: 651-894 bp Feature: domain Description: RVT_N Location: 65 1-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-15 66 bp Feature: domain Description: GIIM Note: maturase Location: 1626-1851 bp Feature: domain Description: GIIM Note: maturase Location: 1626-185 1 bp Feature: gene Location: 2095-2304 bp Feature: gene Location: 2529-2720 bp Feature: gene Location: 5799-5954 bp Feature: gene Location: 5977-7017 bp Feature: domain Description: COG3547 Location: 5995-6970 bp Feature: domain Description: COG35 47 Location: 5 995 -6970 bp Feature: gene Location: 7326-8798 bp Feature: domain Description: RVT_N Location: 7374-7617 bp Feature: domain Description: RVT_N Location: 7374-7617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7662-8289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7662-8289 bp Feature: domain Description: GIIM Note: maturase Location: 8349-8574 bp Feature: domain Description: GIIM Note: maturase Location: 8349-85 74 bp Feature: gene Location: 8883-9026 bp Feature: gene Location: 9157-9816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JAAALS010000078.1 Vibrio toranzoniae strain cmj 9.11 NODE_78_length_10943_cov_53.438332, whole genome shotgun sequence (10943 bp)
Overview 1 RT 1: 5214-9174 bp Neighborhood of RT #1 [5214, 9269] RelE YiaG RVT-GII GIIM AbiEii Feature: gene Location: 5214-5546 bp Feature: domain Description: RelE Location: 5217-5481 bp Feature: domain Description: RelE Location: 5217-5481 bp Feature: gene Location: 5533-5847 bp Feature: domain Description: YiaG Location: 5539-5830 bp Feature: domain Description: YiaG Location: 5539-5830 bp Feature: gene Location: 6794-8038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6956-7649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 956 -76 49 bp Feature: domain Description: GIIM Note: maturase Location: 7733-7937 bp Feature: domain Description: GIIM Note: maturase Location: 7733-7937 bp Feature: gene Location: 8102-8242 bp Feature: gene Location: 8379-9269 bp Feature: domain Description: AbiEii Location: 8505-9174 bp Feature: domain Description: AbiEii Location: 8505-9174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843)