myRT

myRT report for GCA_009907095.1_ASM990709v1

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Seq: JAAATF010000113.1 Klebsiella pneumoniae strain C01 42-C01_contig113, whole genome shotgun sequence (121876 bp)
Overview 1 RT 1: 83213-90081 bp Neighborhood of RT #1 [83213, 90083] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 83213-83941 bp Feature: domain Description: FimC Location: 83246-83924 bp Feature: domain Description: FimC Location: 83246-83924 bp Feature: gene Location: 83973-86582 bp Feature: domain Description: FimD Location: 84030-86571 bp Feature: domain Description: FimD Location: 84030-86571 bp Feature: gene Location: 86582-88660 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 86990-87434 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 86990-87434 bp Feature: gene Location: 88717-89157 bp Feature: domain Description: Integrase_1 Location: 88723-88939 bp Feature: domain Description: Integrase_1 Location: 88723-88939 bp Feature: gene Location: 89418-90083 bp Feature: domain Description: INT_P4_C Location: 89523-90081 bp Feature: domain Description: INT_P4_C Location: 89523-90081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: JAAATF010000263.1 Klebsiella pneumoniae strain C01 42-C01_contig263, whole genome shotgun sequence (9502 bp)
Overview 1 RT 1: 2-1505 bp Neighborhood of RT #1 [2, 1507] RVT-UG3 INT_P4_C PRK09692 Feature: gene Location: 2-754 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 290-755 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 90-755 bp Feature: gene Location: 794-1219 bp Feature: domain Description: INT_P4_C Location: 797-1217 bp Feature: domain Description: INT_P4_C Location: 797-12 17 bp Feature: gene Location: 1292-1507 bp Feature: domain Description: PRK09692 Location: 1301-1505 bp Feature: domain Description: PRK09692 Location: 1301-1505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, INT_P4_C (cd00801), PRK09692 (Integrase; provisional)

Seq: JAAATF010000067.1 Klebsiella pneumoniae strain C01 42-C01_contig67, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 59-1912 bp Neighborhood of RT #1 [59, 1912] RVT-GII Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1700-1912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII