myRT

myRT report for GCA_009907395.1_ASM990739v1

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Seq: JAAATC010000136.1 Klebsiella pneumoniae strain C8 C8_contig136, whole genome shotgun sequence (21718 bp)
Overview 1 RT 1: 15652-20100 bp Neighborhood of RT #1 [15652, 20135] COG4941 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 15652-16203 bp Feature: domain Description: COG4941 Location: 15655-16174 bp Feature: domain Description: COG4941 Location: 1 5655-1 61 74 bp Feature: gene Location: 16727-17182 bp Feature: domain Description: PHA02517 Location: 16736-17156 bp Feature: domain Description: PHA0251 7 Location: 1 6736-1 71 56 bp Feature: gene Location: 17278-18801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17551-18283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7551 -1 8283 bp Feature: domain Description: GIIM Note: maturase Location: 18358-18556 bp Feature: domain Description: GIIM Note: maturase Location: 1 8358-1 8556 bp Feature: gene Location: 19393-19827 bp Feature: domain Description: PHA02517 Location: 19495-19762 bp Feature: domain Description: PHA0251 7 Location: 1 9495-1 9762 bp Feature: gene Location: 19824-20135 bp Feature: domain Description: InsE Location: 19827-20100 bp Feature: domain Description: InsE Location: 1 9827-201 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: JAAATC010000046.1 Klebsiella pneumoniae strain C8 C8_contig46, whole genome shotgun sequence (47069 bp)
Overview 1 RT 1: 43506-46671 bp Neighborhood of RT #1 [43506, 46868] RVT-GII PRK10276 Feature: gene Location: 43506-44258 bp Feature: gene Location: 44327-44617 bp Feature: gene Location: 44747-46234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45152-45842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45152 -45842 bp Feature: gene Location: 46312-46551 bp Feature: gene Location: 46551-46868 bp Feature: domain Description: PRK10276 Location: 46557-46671 bp Feature: domain Description: PRK102 76 Location: 46557-46671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JAAATC010000063.1 Klebsiella pneumoniae strain C8 C8_contig63, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAATC010000007.1 Klebsiella pneumoniae strain C8 C8_contig7, whole genome shotgun sequence (143535 bp)
Overview 1 RT 1: 32176-39029 bp Neighborhood of RT #1 [32176, 39046] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32176-32841 bp Feature: domain Description: INT_P4_C Location: 32281-32839 bp Feature: domain Description: INT_P4 _C Location: 32281-32839 bp Feature: gene Location: 33102-33542 bp Feature: domain Description: Integrase_1 Location: 33108-33324 bp Feature: domain Description: Integrase_1 Location: 33108-33324 bp Feature: gene Location: 33599-35677 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34007-34451 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34 007-34 4 51 bp Feature: gene Location: 35677-38286 bp Feature: domain Description: FimD Location: 35734-38275 bp Feature: domain Description: FimD Location: 35734 -38275 bp Feature: gene Location: 38318-39046 bp Feature: domain Description: FimC Location: 38366-39029 bp Feature: domain Description: FimC Location: 38366-39029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)