myRT

myRT report for GCA_009907665.1_ASM990766v1

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Seq: JAAASK010000101.1 Klebsiella pneumoniae strain 1628 1628_contig101, whole genome shotgun sequence (2762 bp)
Overview 1 RT 1: 2-1529 bp Neighborhood of RT #1 [2, 2761] RVT-Retrons AAA_21 Feature: gene Location: 2-598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182-599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 82-599 bp Feature: gene Location: 713-2761 bp Feature: domain Description: AAA_21 Location: 1142-1529 bp Feature: domain Description: AAA_21 Location: 1 1 42-1 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_21 (pfam13304)

Seq: JAAASK010000030.1 Klebsiella pneumoniae strain 1628 1628_contig30, whole genome shotgun sequence (303433 bp)
Overview 1 RT 1: 264604-271472 bp Neighborhood of RT #1 [264604, 271474] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 264604-265332 bp Feature: domain Description: FimC Location: 264652-265315 bp Feature: domain Description: FimC Location: 2 64652 -2 65315 bp Feature: gene Location: 265364-267973 bp Feature: domain Description: FimD Location: 265421-267962 bp Feature: domain Description: FimD Location: 2 6542 1-2 67962 bp Feature: gene Location: 267973-270051 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268381-268825 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 68381-2 6882 5 bp Feature: gene Location: 270108-270548 bp Feature: domain Description: Integrase_1 Location: 270114-270330 bp Feature: domain Description: Integrase_1 Location: 2 70114-2 70330 bp Feature: gene Location: 270809-271474 bp Feature: domain Description: INT_P4_C Location: 270914-271472 bp Feature: domain Description: INT_P4_C Location: 2 70914-2 71472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: JAAASK010000075.1 Klebsiella pneumoniae strain 1628 1628_contig75, whole genome shotgun sequence (13498 bp)
Overview 1 RT 1: 4723-7993 bp Neighborhood of RT #1 [4723, 8007] RVT-GII PRK10276 Feature: gene Location: 4723-4938 bp Feature: gene Location: 5205-5435 bp Feature: gene Location: 5669-7180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6074-6788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6074-6788 bp Feature: gene Location: 7231-7464 bp Feature: gene Location: 7582-8007 bp Feature: domain Description: PRK10276 Location: 7585-7993 bp Feature: domain Description: PRK10276 Location: 7585-7993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)